View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_high_45 (Length: 239)
Name: NF20365_high_45
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_high_45 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 1902071 - 1901863
Alignment:
| Q |
13 |
agcataggcaataaagacatgattgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
112 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1902071 |
agcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
1901972 |
T |
|
| Q |
113 |
acaggtggcaaaacatccatgtaaaatgaccatcttcttgtcatgtttctgtcacttgcacaacaatcacaaaccttgatgaacttcagaatttctgtga |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1901971 |
acaggtggcaaaacatccatgtaaagtgaccatcttcttgtcatgtttctgtcacttgcacaacaatcacaaaccttgatgaacttcagaatttctgtga |
1901872 |
T |
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| Q |
213 |
catgttttg |
221 |
Q |
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||||||||| |
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| T |
1901871 |
catgttttg |
1901863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 1911116 - 1910960
Alignment:
| Q |
13 |
agcataggcaataaagacatgattgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
112 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| || ||||||||| |
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| T |
1911116 |
agcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcaca |
1911017 |
T |
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| Q |
113 |
acaggtggcaaaacatccatgtaaaatgaccatcttcttgtcatgtttctgtcactt |
169 |
Q |
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| T |
1911016 |
gcaggtggcagaacatccatgtacaaggaccatcttcttgtcatgtttctgtcactt |
1910960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 1884166 - 1884017
Alignment:
| Q |
13 |
agcataggcaataaagacatgattgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
1884166 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcaca |
1884067 |
T |
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| Q |
113 |
acaggtggcaaaacatccatgtaaaatgaccatcttcttgtcatgtttct |
162 |
Q |
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|||||||||| || |||||||||||| |||| | |||||||||| ||||| |
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| T |
1884066 |
acaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttct |
1884017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 1895653 - 1895465
Alignment:
| Q |
20 |
gcaataaagacatgattgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtg |
119 |
Q |
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|||| ||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||||| ||| | ||| | ||||| ||||| | | || |
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| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
|
| Q |
120 |
gcaaaacatccatgtaaaatgaccatcttcttgtcatgtttctgtcacttgcacaacaatcacaaaccttgatgaacttcagaatttct |
208 |
Q |
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| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcatgtttctatcacttacacaacaattacaaaccttggtgaacttcagaatttct |
1895465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 1890810 - 1890667
Alignment:
| Q |
13 |
agcataggcaataaagacatgattgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| | ||| | ||||| |||||| |
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| T |
1890810 |
agcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcacc |
1890711 |
T |
|
| Q |
113 |
acaggtggcaaaacatccatgtaaaatgaccatcttcttgtcat |
156 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
1890710 |
acaggtggcaaaacatccttgtaaaaggaccatcttcttctcat |
1890667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 1878154 - 1878005
Alignment:
| Q |
13 |
agcataggcaataaagacatgattgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcacc |
112 |
Q |
| |
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||||||||||| ||| |||| |||||||||||||||||||| | |||||| | ||| ||| |||||||| |||| ||||||||| | ||||||| |
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| T |
1878154 |
agcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcacc |
1878055 |
T |
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| Q |
113 |
acaggtggcaaaacatccatgtaaaatgaccatcttcttgtcatgtttct |
162 |
Q |
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||| ||| | || |||||||||||| ||||||||||||||||| ||||| |
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| T |
1878054 |
acaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
1878005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 11537577 - 11537456
Alignment:
| Q |
35 |
ttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtggcaaaacatccatgt |
134 |
Q |
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|||||||||||||| |||| | | ||||||||||||||||| ||| |||||||| | || |||| |||||||||||| ||| ||| | || ||| |||| |
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| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccatgtcacatcactcatagcctataatcactacaactggtagaaaatctatgt |
11537478 |
T |
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| Q |
135 |
aaaatgaccatcttcttgtcat |
156 |
Q |
| |
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|||| || ||||||||| |||| |
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| T |
11537477 |
aaaaagatcatcttcttttcat |
11537456 |
T |
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