View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_high_52 (Length: 217)

Name: NF20365_high_52
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_high_52
NF20365_high_52
[»] chr1 (14 HSPs)
chr1 (1-213)||(6502457-6502669)
chr1 (1-202)||(6514486-6514687)
chr1 (1-202)||(6510122-6510323)
chr1 (1-202)||(6497136-6497337)
chr1 (7-175)||(47771473-47771641)
chr1 (4-175)||(6525824-6525995)
chr1 (58-175)||(47775676-47775793)
chr1 (1-122)||(47715605-47715726)
chr1 (1-122)||(47743372-47743493)
chr1 (1-122)||(47700608-47700729)
chr1 (78-122)||(47679487-47679531)
chr1 (78-122)||(47691146-47691190)
chr1 (1-122)||(47710894-47711015)
chr1 (58-151)||(47757744-47757837)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-202)||(4146-4347)
scaffold0341 (1-202)||(11802-12003)
[»] chr8 (1 HSPs)
chr8 (1-122)||(11225535-11225656)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6502669 - 6502457
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  6502669 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatcca 6502570  T
Q  101 tattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6502569 tattggattactttgtgttcaagagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 6502470  T
Q  201 tttgaagatctga 213  Q
    |||||||||||||    
T  6502469 tttgaagatctga 6502457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6514687 - 6514486
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||  | |||||||||||||| |||| |||||| |||||||||||||||||    
T  6514687 ttgtgtaggcatggagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtatcca 6514588  T
Q  101 tattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 200  Q
    |||||||||||||||||||||| ||||| |||  |  |||||||||||||||||| ||||||||| ||||||||||   ||||||||||| ||||| |||    
T  6514587 tattggattactttgtgttcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaattcct 6514488  T
Q  201 tt 202  Q
    ||    
T  6514487 tt 6514486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6510323 - 6510122
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| ||||||||||||||||||  || || |||||||||| ||||||||| || || ||||||||||||||||||||||||||  | |||||||| ||    
T  6510323 ttgtgcaggcatggagaaattggattgatggtactgcaacaattatcatagattctactttaaacaatgattcacgaaatgaaatttttagatgtattca 6510224  T
Q  101 tattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 200  Q
    |||||||||||||||||||||| ||||| |||  |  || |||| |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  6510223 tattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcct 6510124  T
Q  201 tt 202  Q
    ||    
T  6510123 tt 6510122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6497337 - 6497136
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| |||||||||| |||||||  ||||| |||||||||| |||||||||  | || ||||||||||||||||||||||||||  |||||||||| ||    
T  6497337 ttgtgcaggcatggaggaattggaaggagggaactgcaacaagtatcatagatcccacgttaaacaatgattcacgaaatgaaatgttgagatgtataca 6497238  T
Q  101 tattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 200  Q
    |||||||||||||||||||||| ||||| |||  |  || |||| ||||||| || | ||||||||||| ||||| || || |||||||| |||||||||    
T  6497237 tattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgtagtagtgatgctaaatagtgattcagttactctcccaatgcct 6497138  T
Q  201 tt 202  Q
    ||    
T  6497137 tt 6497136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 47771473 - 47771641
Alignment:
Q  7 aggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatccatattgg 106  Q
    ||||||||||||  |||||||||||||  |||  |||||| |||||  |  |||||||||||  ||||  |||||||||||||||||| |||||||||||    
T  47771473 aggcatggagaagctggagagaggggaaggcacaaaatatgatagatgcagcattaaacaatatttcagcaaatgaaataatgagatgcatccatattgg 47771572  T
Q  107 attactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatag 175  Q
     ||||||||||||||| | ||| ||||  | ||||||||||||||| || ||| | | |||||||||||    
T  47771573 cttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgttgcactcatgcttaatag 47771641  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 6525824 - 6525995
Alignment:
Q  4 tgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatccatat 103  Q
    |||||| |||||||||||||||||| ||| |  |||||||| | |||||  | ||||||||||||||||||   || |||||||||||||| ||||| ||    
T  6525824 tgtaggtatggagaaattggagagatgggtcaccaacaaatgttatagatcccacattaaacaatgattcagtgaacgaaataatgagatgcatccacat 6525923  T
Q  104 tggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatag 175  Q
    ||| ||||||||||||||| | |||  ||  |  || ||||| ||||||||||||||| | |||||||||||    
T  6525924 tgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctattgtactaatgcttaatag 6525995  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 47775676 - 47775793
Alignment:
Q  58 cattaaacaatgattcacgaaatgaaataatgagatgtatccatattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctat 157  Q
    |||||||||||  ||||  |||||||||||||||||||||||||||||  ||||||||||||||| | ||| ||||  | ||||||||||||||| || |    
T  47775676 cattaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgt 47775775  T
Q  158 tgtagtgatgcttaatag 175  Q
    || | | |||||||||||    
T  47775776 tgcactcatgcttaatag 47775793  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47715726 - 47715605
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| ||||||||||||| ||||||||||| ||    |||||||| |||||  |  |||||| ||||| |||||||||||||||||||||||| || ||    
T  47715726 ttgtgcaggcatggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattca 47715627  T
Q  101 tattggattactttgtgttcaa 122  Q
     ||||  ||||| |||||||||    
T  47715626 cattgctttactatgtgttcaa 47715605  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47743493 - 47743372
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| ||||||||||||| ||||||||||| ||    |||||||| |||||  |  |||||| ||||| |||||||||||||||||||||||| || ||    
T  47743493 ttgtgcaggcatggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattca 47743394  T
Q  101 tattggattactttgtgttcaa 122  Q
     ||||  ||||| |||||||||    
T  47743393 cattgctttactatgtgttcaa 47743372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47700729 - 47700608
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| ||||||||||||| ||||| ||||| ||    |||||||| |||||  |  |||||||||| | ||||| |||||||||||||||||| || ||    
T  47700729 ttgtgcaggcatggagaaactggagggagggtacaatcacaaatataatagatccatcattaaacaacggttcacaaaatgaaataatgagatgcattca 47700630  T
Q  101 tattggattactttgtgttcaa 122  Q
     ||||  ||||| |||||||||    
T  47700629 cattgctttactatgtgttcaa 47700608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 47679487 - 47679531
Alignment:
Q  78 aatgaaataatgagatgtatccatattggattactttgtgttcaa 122  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||    
T  47679487 aatgaaaaaatgagatgcatccatgttggattactttgtgttcaa 47679531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 47691146 - 47691190
Alignment:
Q  78 aatgaaataatgagatgtatccatattggattactttgtgttcaa 122  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||    
T  47691146 aatgaaacaatgagatgcatccatgttggattactttgtgttcaa 47691190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47711015 - 47710894
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| |||||||||| | |||||| ||||| ||    |||||||| |||||  |  |||||| ||||| ||||| |||||||||||||||||| || ||    
T  47711015 ttgtgcaggcatggaggagttggagggagggtacaatcacaaatataatagatccatcattaagcaatggttcacaaaatgaaataatgagatgcattca 47710916  T
Q  101 tattggattactttgtgttcaa 122  Q
     ||||  ||||| |||||||||    
T  47710915 cattgctttactatgtgttcaa 47710894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 47757837 - 47757744
Alignment:
Q  58 cattaaacaatgattcacgaaatgaaataatgagatgtatccatattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggc 151  Q
    |||||| ||||| ||||| |||||||||||||||||| || || ||||  ||||| ||||||||| | ||| | ||  | ||||||||||||||    
T  47757837 cattaagcaatggttcactaaatgaaataatgagatgcattcacattgctttactatgtgttcaagaaaatttggttgaaagaccaaccatggc 47757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4347 - 4146
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  4347 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatcca 4248  T
Q  101 tattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 200  Q
    |||||||||||||||||||||| ||||| |||  |  || |||| |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  4247 tattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcct 4148  T
Q  201 tt 202  Q
    ||    
T  4147 tt 4146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 12003 - 11802
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  12003 ttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatcca 11904  T
Q  101 tattggattactttgtgttcaaaagaatatagtaaatagaccaaccatggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgcct 200  Q
    |||||||||||||||||||||| ||||| |||  |  || |||| |||||||||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  11903 tattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcct 11804  T
Q  201 tt 202  Q
    ||    
T  11803 tt 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 11225535 - 11225656
Alignment:
Q  1 ttgtgtaggcatggagaaattggagagaggggactgcaacaaatatcatagactcgacattaaacaatgattcacgaaatgaaataatgagatgtatcca 100  Q
    ||||| ||||||||||||| ||||||||||| ||    |||||||| |||||  |  |||||| ||||| |||||||||||||||||||||||| || ||    
T  11225535 ttgtgcaggcatggagaaactggagagagggtacaatcacaaatataatagatccatcattaagcaatggttcacgaaatgaaataatgagatgcattca 11225634  T
Q  101 tattggattactttgtgttcaa 122  Q
     ||||  ||||| |||||||||    
T  11225635 cattgctttactatgtgttcaa 11225656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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