View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_1 (Length: 801)
Name: NF20365_low_1
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 35745174 - 35744796
Alignment:
| Q |
18 |
atgagaacactgaatgatctacaaaggctatatccagagatcataacaaaaactcaactgtcaaagattgaggacaagtctattgatcaggtaattatag |
117 |
Q |
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| T |
35745174 |
atgagaacactgaatgatctacaaaggctatatccagagatcataacaaaaactcaagtgtcaaagattgaggacaagtctattgatcaggtaattatag |
35745075 |
T |
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| Q |
118 |
tttcaacattaaataagctgcacctgaaatgaaattattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttatttt |
217 |
Q |
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| T |
35745074 |
tttcaacattaaataagctgcacctgaaatgaaattattctaattatgataattactgaaatcttagcatcctgaaaatctaaatgtggacatttatttt |
35744975 |
T |
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| Q |
218 |
atactaggctgtggcctacttctgtgaggctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttcca |
317 |
Q |
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| T |
35744974 |
atactaggctgtggcctacttctgtgaggctttgaagtctcttggagagtcatggatgatggacaatgattgcatggataagcttgatattgcatttcca |
35744875 |
T |
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| Q |
318 |
acatgcaaggatgacaacaacatgcgtcaattgggtatgttactaatgatcttagatatgcatcaacaatgtaaaaacttctt |
400 |
Q |
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| T |
35744874 |
acatgcaaggatgacaacaacatgcgtcaattgggtatgttattaatgatct----tatgcatcaacaatgtaaaaacttctt |
35744796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 444 - 790
Target Start/End: Complemental strand, 35744757 - 35744411
Alignment:
| Q |
444 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
543 |
Q |
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| T |
35744757 |
gaaagtgatataacaaaagtgacatcaatgtaaaatgtgattggattcgaggcctgcataaaagtgcatactcgttaaaaatgcaataattatctcctcc |
35744658 |
T |
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| Q |
544 |
tgcgttgcatgggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
643 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744657 |
tgcgttgcattggttaaaatactagtttgtcagttttcaagcaatttgatttgttgtgcaggtgaaactttgctggtgactctagattatttgatgaagt |
35744558 |
T |
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| Q |
644 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
743 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744557 |
tagcaagtgagagatttgacatagaagaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcatt |
35744458 |
T |
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| Q |
744 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
790 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744457 |
ttcagatagtagctgctcatctcctctaacacctagatctgtgctcc |
35744411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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