View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_13 (Length: 429)
Name: NF20365_low_13
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 41 - 412
Target Start/End: Original strand, 22364530 - 22364918
Alignment:
| Q |
41 |
ccttcataagtttgtttaaatacacataagtttcaagattttcacaattcaaacaaactcttaactatgaataagaggttt-----------------ca |
123 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
22364530 |
ccttcataagtttgtttagatacacataagtttcaagattttcacaattcaaacaaactcttaactatgaattagaggtttgatagatggtttcatttca |
22364629 |
T |
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| Q |
124 |
attatcatcatcataaacataaactcttacacaatgaaatgtatagacccaatacacaatgttggcaacaaatttaatgcatagactccaaataataatt |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22364630 |
attatcatcatcataaacataaactcttacacaatgaaatgtatagacccaatacacaatgttggcaacaaatttaatgaatagactccaaataataatt |
22364729 |
T |
|
| Q |
224 |
taatttcaaacaattgtgagcaaaagattaacaatttgtcatatatatttttcactataaatatatttagaaagaattcagaataaaatattgcacaaag |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
22364730 |
taatttcaaacaattgtgagcaaaagattaacaatttgtcatatatatttgtcactataaatatatttaaaaagaattcaaaataaaatattgcacaaag |
22364829 |
T |
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| Q |
324 |
aagagtcattcctcaaattgattagtgtaactacaaacacaatccctatccctattctaaacttctaaaactgaaaatatcatggtttg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22364830 |
aagagtcattcctcaaattgattagtgtaactacaaacacaatccctatccctattctaaacttccaaaactgaaaatatcatggtttg |
22364918 |
T |
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