View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_14 (Length: 427)
Name: NF20365_low_14
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 34830261 - 34830658
Alignment:
| Q |
14 |
agacactagtcattattagtattttttgatnnnnnnngacactactcattattatattctcatttaataattttgttttgctacaaaaatattgtgcaca |
113 |
Q |
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| T |
34830261 |
agacactagtcattattagtattttttgataaaaaaagacactactcattattatattctcatttaataattttgttttgctacaaaaatattgtgcaca |
34830360 |
T |
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| Q |
114 |
cattaattaatggggtagggtgagttgtatagtaagacggatgaagtaagatggaaaatggtggcgataatttcgtatgggcaagaatgtgacttgcttc |
213 |
Q |
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| T |
34830361 |
cattaattaatggggtagggtgagttgtatagtaagacggatgaagtaagatggaaaatggtggcgataatttcgtatgggcaagaatgtgacttgcttc |
34830460 |
T |
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| Q |
214 |
atacaagtaggaaaactgtcccannnnnnngttatatatatgtgatgaattctttaccctaagatatagctcattaacaaatattttggtataaagaaaa |
313 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830461 |
atacaagtaggaaaactgtcccatttttttgttatatatatgtgatgaattctttaccctaagatatagctcattaacaaatattttggtataaagaaaa |
34830560 |
T |
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| Q |
314 |
agaaatattagcttcttcatttctcttgatataggttcaacaaccaactactttcatttcttcttggccaacaaatgctgttaaatgaaacaatcaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830561 |
agaaatattagcttcttcatttctcttgatataggttcaacaaccaactactttcatttcttcttggccaacaaatgctgttaaatgaaacaatcaat |
34830658 |
T |
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