View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_19 (Length: 377)
Name: NF20365_low_19
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 54181654 - 54181292
Alignment:
| Q |
1 |
ctaaagctcttatttttaattttaaagtgattttttgtgccaaaacaaatcaagccaaacaaagtctaaaagttgtgtttgtgcagaggcttctggatgc |
100 |
Q |
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| T |
54181654 |
ctaaagctcttatttttaattttaaagtgatttttagtgccaaaacaaatcaagtcaaacaaagtctaaaagttgtgtttgtgcagaggcttctggatgc |
54181555 |
T |
|
| Q |
101 |
ttcacacagagacttgagaagagccagggctgcagcactgaacattgtccccaccagcacaggagcagccaaggctgtctctctagtgctgccacagctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181554 |
ttcacacagagacttgagaagagccagggctgcagcactgaacattgtccccaccagcacaggagcagccaaggctgtctctctagtgctgccacagctc |
54181455 |
T |
|
| Q |
201 |
aagggaaagctcaatggaatcgcccttcgtgtgccaacacctaatgtttcagttgttgaccttgtggtgaatgttgcgaagaagggtatttcagctgaag |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54181454 |
aagggaaagctcaacggaatcgcccttcgtgtgccaacacctaatgtttcagttgttgaccttgtggtgaatgttgcgaagaagggtatttcagccgaag |
54181355 |
T |
|
| Q |
301 |
atgtcaatgcagcattcagaaaggcagctgagggaccactgaaaggtgttttggatgtctgtg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181354 |
atgtcaatgcagcattcagaaaggcagctgagggaccactgaaaggtgttttggatgtctgtg |
54181292 |
T |
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