View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20365_low_20 (Length: 359)
Name: NF20365_low_20
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 1516171 - 1516500
Alignment:
| Q |
13 |
aatatttttcaataccaaaataaaaaagaaattaacaatactttcatatcattatgctcaatataagatgtgatcatcaattttaaatttaataacacta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516171 |
aatatttttcaataccaaaataaaaaagaaattaacaatactttcatatcattatgctcaatataagatgtgatcatcaattttaaatttaataacacta |
1516270 |
T |
|
| Q |
113 |
catgtacaaaacaataatatcactaaagcatgcacatcaaaatccatatacactacttttatataaaaacaacatgcaatcatataatatattgtttcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1516271 |
catgtacaaaacaataatatcactaaagcatgcacatcaaaatccatatacactacttttatataaaaacaacatgcaatcatataatatattgtttcag |
1516370 |
T |
|
| Q |
213 |
tcagtcactaaaagattaaaattaaccatgtttctgtcattgttcatattctgtttatttttaaattggctacgtgcaaaacacagttaaaatactccaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1516371 |
tcagtcactaaaagattaaaattaaccatgtttctgtcattgttcatattctgtttatttttaaattggctatgtgcaaaacacagttaaaatactccaa |
1516470 |
T |
|
| Q |
313 |
tggatttctgtctatatttctgactctttt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1516471 |
tggatttctgtctatatttctgactctttt |
1516500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 1494363 - 1494555
Alignment:
| Q |
13 |
aatatttttcaataccaaaataaaaaagaaattaacaatactttcatatcattatgctcaatataagatgtgatcatcaattttaaatttaataacacta |
112 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
1494363 |
aatatattttaataccaaaataaaaaagaaattaacaatactttcatatcatcatgcacaatataagatgtgagcatcaattttaaatttaataacccta |
1494462 |
T |
|
| Q |
113 |
catgtacaaaacaataatatcactaaagcatgcacatcaa----aatccatatacactacttttatataaaaacaacatgcaatcatataatatattg |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1494463 |
caa----aaaacaataatatcactaaagcatgcacatcaaaattaatccatatacactacttttatat-aaaacaacatgcaatcaaataatatattg |
1494555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 1532367 - 1532514
Alignment:
| Q |
13 |
aatatttttcaataccaaaataaaaaagaaattaacaatactttcatatcattatgctcaatataagatgtgatcatcaattttaaatttaataacacta |
112 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1532367 |
aatatttttctataccaaaataaaaaataaattaacaatacattcatatcatcatgcagaatataagatgtgatcatcaattttaaatttaataacgcta |
1532466 |
T |
|
| Q |
113 |
catgtacaaaacaataatatcactaaagcatgcacatcaaaatccatataca |
164 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1532467 |
c----acaaaacaataatatcactaaagcatgcacatcaaaatccatataca |
1532514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 1494830 - 1494941
Alignment:
| Q |
231 |
aaattaaccatgtttctgtcattgttcatattctgtttatttttaaattggctacgtgcaaaacacagttaaaatactccaatggatttctgtctatatt |
330 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1494830 |
aaattagccatgtttctgtcattgttcatattctgtttgtttttaatttggctatgtgcaaaacacaattaaaatactccaatggatttctgtctatatt |
1494929 |
T |
|
| Q |
331 |
tctgactctttt |
342 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1494930 |
tctgactctttt |
1494941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 1532951 - 1533062
Alignment:
| Q |
231 |
aaattaaccatgtttctgtcattgttcatattctgtttatttttaaattggctacgtgcaaaacacagttaaaatactccaatggatttctgtctatatt |
330 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1532951 |
aaattagccatgtttctgtcattgttcatattctgtttgtttttaatttggctatgtgcaaaacacaattaaaatactccaatggatttctgtctatatt |
1533050 |
T |
|
| Q |
331 |
tctgactctttt |
342 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
1533051 |
tccgactctttt |
1533062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 29005818 - 29005764
Alignment:
| Q |
151 |
aaaatccatatacactacttttatataaaaacaacatgcaatcatataatatatt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29005818 |
aaaatccatatacactacttttatataaaaacaacatgcaatcttataatatatt |
29005764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University