View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_21 (Length: 356)
Name: NF20365_low_21
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 28840249 - 28840032
Alignment:
| Q |
5 |
cagtagcatagggtacaaaataagtggatgtgtagttttgtttttccttcttttattatatttgaaggacttgtaatgtgctatggatgcaagcactttg |
104 |
Q |
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| T |
28840249 |
cagtatcagagggtacaaaataagtggatgtgtagttttgtttttccttcttttattatatttgaaggacttgtaatgtgctatggatgcaagcactttg |
28840150 |
T |
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| Q |
105 |
agcaaagtgtctcttttggctaaggaattaatctttctcccactgaagagatacatagtgtatttagagttcaagaaaaataaataag---actcctttc |
201 |
Q |
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| T |
28840149 |
agcaaagtgtctcttttggctaaggaattaatctttctcccactgaagagatacatagtgtatttagagttcaagaaaaataaataagaaaactcctttc |
28840050 |
T |
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| Q |
202 |
tattaaactacctagctt |
219 |
Q |
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|||||||||||||||||| |
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| T |
28840049 |
tattaaactacctagctt |
28840032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 28827948 - 28827814
Alignment:
| Q |
58 |
tattatatttgaaggacttgtaatgtgctatggatgcaagcactttgagcaaagtgtctcttttggctaaggaattaatctttctcccactgaagagata |
157 |
Q |
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| T |
28827948 |
tattgtatttgaaggacttgtaatgtgctgggcaagcaagcactttgagcaaagtgactcttttggctgaggtattattctttctcctattggagatata |
28827849 |
T |
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| Q |
158 |
catagtgtatttagagttcaagaaaaataaataag |
192 |
Q |
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| T |
28827848 |
cattgtgtatttatagtacaagaaaaataaataag |
28827814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 28837286 - 28837196
Alignment:
| Q |
98 |
cactttgagcaaagtgtctcttttggctaaggaattaatctttctcccactgaagagatacatagtgtatttagagttcaagaaaaataaa |
188 |
Q |
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|||||||||||||| |||||||||| | ||| |||| ||||||||| | |||||| |||||| || |||||| ||| ||||||||||||| |
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| T |
28837286 |
cactttgagcaaagcctctcttttggttgaggtattattctttctcctaatgaagatatacattgtatatttatagtacaagaaaaataaa |
28837196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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