View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_22 (Length: 351)
Name: NF20365_low_22
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 43 - 337
Target Start/End: Original strand, 25996126 - 25996416
Alignment:
| Q |
43 |
aaatgaggtgttaaatatgtgttggaaaattggaaggtacctatataaaagctcttttatttgtacaggactactcctttgtcacattaaattacatgcc |
142 |
Q |
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| T |
25996126 |
aaatgaggtgttaaatatgtgttggaaaattggaaggtacctatataaaagctcttttatttgtacacgactactcctttgtcacattaaattacatgcc |
25996225 |
T |
|
| Q |
143 |
tcgacaccaagacactagtcaaaacgagcatataaaagaaaaggacgtaacataacattgnnnnnnnntgcattcaaatactcaataaatttgttctttg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25996226 |
tcgacaccaagacactagtcaaaacgagcatataaaagaaaaggacgtaacataacattgaaaaaaaatgcattcaaatactcaataaatttgttctttg |
25996325 |
T |
|
| Q |
243 |
aatagtatataatcaaacaattgatttgatcctatgannnnnnnnnnnntcaggtttttaccactctgccattctcaattcccacgagatgaaag |
337 |
Q |
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|| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996326 |
tattgtatctaatcaaacaattgatttgatcctatga----atatatattcaggtttttaccactctgccattctcaattcccacgagatgaaag |
25996416 |
T |
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