View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20365_low_25 (Length: 341)
Name: NF20365_low_25
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 43051902 - 43051591
Alignment:
| Q |
13 |
aatattgacaacatgagacttaaatacaacctcaataatatgaatactagaaatttgtgtgcgaaattgaataatttaccttcttcccacggatgacagc |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051902 |
aatattggcaacatgagacttaaatacaacctcaataatatgaatactagaaatttgtgtgcgaaattgaataatttaccttcttcccacggatgacagc |
43051803 |
T |
|
| Q |
113 |
accagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttcgtcaaaatctttcataatatcagtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051802 |
accagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttcgtcaaaatctttcataatatcagtg |
43051703 |
T |
|
| Q |
213 |
ttctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagtaatatgtgcacctcctaatcaaaatc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43051702 |
ttctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagtaatatgtgcacctcctaatcaaaatc |
43051603 |
T |
|
| Q |
313 |
taatcttcaaat |
324 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43051602 |
taatcttcaaat |
43051591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 34173060 - 34173209
Alignment:
| Q |
88 |
ttaccttcttcccacggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttc |
187 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||||| || |||||||| |||| | | ||||||||| ||| ||||| |||||||| || ||||| |
|
|
| T |
34173060 |
ttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttc |
34173159 |
T |
|
| Q |
188 |
gtcaaaatctttcataatatcagtgttctcttgaggcttaatctgaaaaa |
237 |
Q |
| |
|
||| ||||||||||| ||| |||| |||| | |||||||| ||| |||| |
|
|
| T |
34173160 |
gtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaa |
34173209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University