View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_low_28 (Length: 325)

Name: NF20365_low_28
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_low_28
NF20365_low_28
[»] chr8 (23 HSPs)
chr8 (50-158)||(40566509-40566617)
chr8 (72-140)||(4994155-4994223)
chr8 (56-122)||(17893301-17893367)
chr8 (171-213)||(27072935-27072977)
chr8 (47-140)||(1806238-1806331)
chr8 (171-211)||(8402596-8402636)
chr8 (69-139)||(21125022-21125092)
chr8 (47-146)||(8402543-8402640)
chr8 (171-215)||(20271133-20271177)
chr8 (171-215)||(21057761-21057805)
chr8 (171-215)||(36009847-36009891)
chr8 (47-147)||(38357544-38357644)
chr8 (56-140)||(40694684-40694768)
chr8 (217-267)||(4220323-4220373)
chr8 (56-97)||(4994267-4994308)
chr8 (55-120)||(20271104-20271169)
chr8 (55-120)||(21057732-21057797)
chr8 (171-212)||(23848359-23848400)
chr8 (171-215)||(4994273-4994317)
chr8 (59-99)||(17893428-17893468)
chr8 (56-108)||(27072918-27072970)
chr8 (171-211)||(36009942-36009982)
chr8 (180-216)||(42072636-42072672)
[»] scaffold0003 (2 HSPs)
scaffold0003 (47-138)||(136394-136485)
scaffold0003 (171-211)||(136441-136481)
[»] chr4 (24 HSPs)
chr4 (59-140)||(45654082-45654163)
chr4 (59-140)||(2324745-2324826)
chr4 (60-121)||(21433861-21433922)
chr4 (171-215)||(16458039-16458083)
chr4 (171-215)||(29566062-29566106)
chr4 (171-219)||(52374888-52374936)
chr4 (171-214)||(7403203-7403246)
chr4 (61-147)||(17508828-17508914)
chr4 (55-104)||(41840576-41840625)
chr4 (171-204)||(42516565-42516598)
chr4 (171-215)||(15134542-15134586)
chr4 (72-140)||(16457920-16457988)
chr4 (56-140)||(21433944-21434028)
chr4 (97-215)||(993242-993361)
chr4 (171-202)||(2247568-2247599)
chr4 (63-138)||(9023901-9023976)
chr4 (56-119)||(32286323-32286386)
chr4 (46-140)||(52374891-52374985)
chr4 (172-204)||(1338419-1338451)
chr4 (56-120)||(7403174-7403238)
chr4 (171-211)||(15134687-15134727)
chr4 (63-119)||(16577343-16577399)
chr4 (171-211)||(21433993-21434033)
chr4 (175-211)||(34252000-34252036)
[»] chr6 (18 HSPs)
chr6 (56-122)||(4787806-4787872)
chr6 (48-121)||(17600695-17600768)
chr6 (56-155)||(1473599-1473698)
chr6 (56-104)||(5706726-5706774)
chr6 (171-215)||(5706739-5706783)
chr6 (171-219)||(12731525-12731573)
chr6 (56-104)||(19711622-19711670)
chr6 (171-211)||(31946938-31946978)
chr6 (172-215)||(4483487-4483530)
chr6 (172-215)||(17390018-17390061)
chr6 (171-214)||(24691924-24691967)
chr6 (59-128)||(4033075-4033144)
chr6 (72-121)||(9358219-9358268)
chr6 (178-215)||(9644892-9644929)
chr6 (178-215)||(9650909-9650946)
chr6 (47-108)||(12731657-12731718)
chr6 (171-211)||(1473594-1473634)
chr6 (171-211)||(12731674-12731714)
[»] chr1 (14 HSPs)
chr1 (50-140)||(38663629-38663719)
chr1 (171-215)||(7444256-7444300)
chr1 (171-206)||(5695662-5695697)
chr1 (71-146)||(49403471-49403546)
chr1 (72-146)||(34437598-34437672)
chr1 (90-139)||(4713268-4713317)
chr1 (47-132)||(49822607-49822692)
chr1 (171-215)||(34437717-34437761)
chr1 (82-146)||(40668939-40669003)
chr1 (171-211)||(49822648-49822688)
chr1 (171-206)||(21281461-21281496)
chr1 (56-119)||(34437689-34437752)
chr1 (171-215)||(40669049-40669091)
chr1 (171-215)||(7444401-7444445)
[»] chr3 (20 HSPs)
chr3 (56-140)||(29955022-29955106)
chr3 (56-140)||(30004176-30004260)
chr3 (56-140)||(36480778-36480862)
chr3 (56-119)||(35357301-35357364)
chr3 (57-140)||(51541316-51541399)
chr3 (59-140)||(31205356-31205437)
chr3 (56-120)||(37189235-37189299)
chr3 (46-121)||(14345125-14345200)
chr3 (89-139)||(1753333-1753383)
chr3 (171-217)||(14345124-14345170)
chr3 (173-211)||(36480829-36480867)
chr3 (60-139)||(32880985-32881064)
chr3 (72-138)||(3901499-3901565)
chr3 (173-211)||(35415091-35415129)
chr3 (69-138)||(3901566-3901635)
chr3 (56-89)||(36046329-36046362)
chr3 (82-139)||(48543454-48543511)
chr3 (171-211)||(26986272-26986312)
chr3 (172-212)||(36046323-36046363)
chr3 (171-215)||(36480682-36480726)
[»] chr2 (17 HSPs)
chr2 (47-140)||(18719708-18719799)
chr2 (56-140)||(42094274-42094357)
chr2 (171-211)||(42094322-42094362)
chr2 (56-135)||(12703456-12703535)
chr2 (174-215)||(16209498-16209539)
chr2 (63-119)||(1469730-1469786)
chr2 (47-119)||(3466479-3466551)
chr2 (171-215)||(25666918-25666962)
chr2 (171-205)||(6979116-6979150)
chr2 (56-101)||(30841085-30841130)
chr2 (82-135)||(44487163-44487216)
chr2 (179-211)||(3466515-3466547)
chr2 (60-120)||(9430228-9430288)
chr2 (56-132)||(15194519-15194595)
chr2 (72-108)||(30841009-30841045)
chr2 (175-215)||(35715097-35715137)
chr2 (186-214)||(38835333-38835361)
[»] chr5 (19 HSPs)
chr5 (171-215)||(33029469-33029513)
chr5 (171-215)||(41169510-41169554)
chr5 (72-141)||(4158149-4158218)
chr5 (171-220)||(35244940-35244989)
chr5 (171-215)||(3907631-3907675)
chr5 (171-215)||(4190181-4190225)
chr5 (181-215)||(9999795-9999829)
chr5 (56-121)||(25545204-25545267)
chr5 (173-215)||(26608579-26608621)
chr5 (58-140)||(36059278-36059360)
chr5 (55-121)||(42420107-42420173)
chr5 (179-212)||(18247868-18247901)
chr5 (60-139)||(38029531-38029607)
chr5 (173-218)||(40927728-40927773)
chr5 (171-215)||(3450178-3450222)
chr5 (171-211)||(17474893-17474933)
chr5 (171-211)||(25545199-25545239)
chr5 (179-215)||(27195379-27195415)
chr5 (187-215)||(36059184-36059212)
[»] chr7 (16 HSPs)
chr7 (56-118)||(5443622-5443684)
chr7 (56-118)||(5452667-5452729)
chr7 (175-212)||(26327772-26327809)
chr7 (47-140)||(26862984-26863077)
chr7 (59-140)||(47497771-47497852)
chr7 (175-214)||(31042115-31042154)
chr7 (56-119)||(31042395-31042458)
chr7 (179-217)||(3235532-3235570)
chr7 (171-213)||(12275858-12275900)
chr7 (59-132)||(3235546-3235619)
chr7 (171-220)||(40134504-40134553)
chr7 (82-139)||(46074127-46074184)
chr7 (171-215)||(5443505-5443549)
chr7 (171-215)||(5452550-5452594)
chr7 (56-140)||(12275809-12275893)
chr7 (172-212)||(22044915-22044955)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 40566617 - 40566509
Alignment:
Q  50 gaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccatgcg 149  Q
    |||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||| || |||||||||||||| |||||||||  |||||||||      
T  40566617 gaatgttagcaacacacattttaacacatatttttcaacacgctctttttgattggttaaaattcacatgagtctcaccaaatcatggaggatccatgta 40566518  T
Q  150 aattttaac 158  Q
    |||||||||    
T  40566517 aattttaac 40566509  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 4994155 - 4994223
Alignment:
Q  72 aacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    ||||||||||||||||||||||||||||||||||||| || ||  ||||||| || |||||||||||||    
T  4994155 aacacatattttttaacatactctttttgattggttaaaattcttatgagtcccaccaaatcatgtggg 4994223  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 17893301 - 17893367
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagt 122  Q
    |||||||||||||||||||| | ||||||||||| ||||| ||||||| |||| |||||||||||||    
T  17893301 tagcaacacacattttaacatacattttttaacagactctctttgattagttaaaactcacatgagt 17893367  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 27072935 - 27072977
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttc 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  27072935 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagtatttc 27072977  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 1806331 - 1806238
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    ||||||| ||||||||||||||||||||||||| |||| |||||||| | ||| | | |||| ||||||| || ||| || |||| ||||||||    
T  1806331 gaggaatgttagcaacacacattttaacacatacttttcaacatactttatttcactagttaaaactcacttgggtcccaccaaaccatgtggg 1806238  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 8402596 - 8402636
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  8402596 tgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcatt 8402636  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 21125092 - 21125022
Alignment:
Q  69 tttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    ||||||||||| ||||||||| | ||| |||||||| ||| || | ||||| |||||||||||||||||||    
T  21125092 tttaacacatactttttaacacattctatttgattgattaaaatttacatgggtctcatcaaatcatgtgg 21125022  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 8402640 - 8402543
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccat 146  Q
    |||||||  |||||||||||||||||||||| | |||| |||  || || |||||||||||| ||||| |||| | | || |||||||||||||| ||||    
T  8402640 gaggaatgctagcaacacacattttaacacacacttttcaac--acactatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccat 8402543  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 20271133 - 20271177
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||    
T  20271133 tgtgttgaaaagtgcgtgttaaaatgtgtgttgctaacatttctc 20271177  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 21057761 - 21057805
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||||| |||||||||| |||||||||| ||||||||    
T  21057761 tgtgttgaaaagtgcgtgttaaaatgtgtgttgctaacatttctc 21057805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 36009891 - 36009847
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||||    
T  36009891 tgtgttggaaagtgtgtgttagaatgtgtgttgctagcatttctc 36009847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 38357544 - 38357644
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccat 146  Q
    |||||||  |||||||||||||| || |||| | |||  |||| ||||| ||||||| |||  |||||||||||| | || ||||||||||||| |||||    
T  38357544 gaggaatgctagcaacacacattctagcacacactttccaacacactctctttgattagttgaaactcacatgagacccaccaaatcatgtgggttccat 38357643  T
Q  147 g 147  Q
    |    
T  38357644 g 38357644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 40694768 - 40694684
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    ||||||||||| |||||||||| | |||| || | ||||||||| ||| |||| || ||||||| ||| || |||||||||||||    
T  40694768 tagcaacacacgttttaacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtggg 40694684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 4220373 - 4220323
Alignment:
Q  217 tatctatgtatttaaatttgtttgaggtttcaccgacaaataaaaattatt 267  Q
    ||||||| ||||||||||||||| ||| |||||| | ||||||||||||||    
T  4220373 tatctatctatttaaatttgttttaggcttcacctataaataaaaattatt 4220323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 4994308 - 4994267
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactcttt 97  Q
    |||||||||||||||||||||| | ||||||||| |||||||    
T  4994308 tagcaacacacattttaacacacaatttttaacacactcttt 4994267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 20271169 - 20271104
Alignment:
Q  55 ttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatga 120  Q
    ||||||||||||||||||||||  | |||| |||| ||||| ||||||| |||| || ||||||||    
T  20271169 ttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacatga 20271104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 21057797 - 21057732
Alignment:
Q  55 ttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatga 120  Q
    ||||||||||||||||||||||  | |||| |||| ||||| ||||||| |||| || ||||||||    
T  21057797 ttagcaacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacatga 21057732  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 23848359 - 23848400
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcattt 212  Q
    ||||||||||| | || |||||||||||||||||||||||||    
T  23848359 tgtgttgaaaattatgcgttaaaatatgtgttgctagcattt 23848400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 4994273 - 4994317
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||| |||| ||||||||||||| |||||||||||| ||||||    
T  4994273 tgtgttaaaaattgtgtgttaaaatgtgtgttgctagcgtttctc 4994317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 17893468 - 17893428
Alignment:
Q  59 caacacacattttaacacatattttttaacatactcttttt 99  Q
    ||||||||||||||||||| |||||| |||||||| |||||    
T  17893468 caacacacattttaacacacatttttcaacatacttttttt 17893428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 27072970 - 27072918
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggtta 108  Q
    |||||||||| ||||||||||| | |||| |||| | ||||||||||||||||    
T  27072970 tagcaacacatattttaacacacacttttcaacacattctttttgattggtta 27072918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 36009942 - 36009982
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||| ||||||||||||||||| | |||||||||||||    
T  36009942 tgtgttggaaagtgtgtgttaaaatgtttgttgctagcatt 36009982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 42072672 - 42072636
Alignment:
Q  180 aagtgtgtgttaaaatatgtgttgctagcatttctcg 216  Q
    |||||||||||||||| || |||||||||||||||||    
T  42072672 aagtgtgtgttaaaatgtgcgttgctagcatttctcg 42072636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 138
Target Start/End: Complemental strand, 136485 - 136394
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtg 138  Q
    |||||||  |||||| ||||||||||||||| |||||| |||| |||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  136485 gaggaatgctagcaatacacattttaacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtg 136394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 136441 - 136481
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  136441 tgtgttgaaaaatgtgtgttaaaatgtgtattgctagcatt 136481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 45654163 - 45654082
Alignment:
Q  59 caacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    ||||| ||||| ||||||||||||||||||| ||| |||||||||||||| || |||||||  || ||||||||||||||||    
T  45654163 caacatacattctaacacatattttttaacacactttttttgattggttaaaattcacatggatcccatcaaatcatgtggg 45654082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 2324745 - 2324826
Alignment:
Q  59 caacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||||||||| || | |||| || ||||||| |||||||||||| || |||||||||| ||| |||||||||||||    
T  2324745 caacacacattttaacgcacacttttcaatatactctctttgattggttaaaattcacatgagtttcaccaaatcatgtggg 2324826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 21433861 - 21433922
Alignment:
Q  60 aacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgag 121  Q
    |||||||||||||||||| |||||| |||| ||||| |||||||||||| || |||||||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgag 21433922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 16458039 - 16458083
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||    
T  16458039 tgtgttgaaaagtgtgtgttagaatgtgtgttgctagcatttctc 16458083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 29566062 - 29566106
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||    
T  29566062 tgtgttgaaaagtatgtgttaaaatacgtgttgctagcatttctc 29566106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 52374936 - 52374888
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctcgtat 219  Q
    ||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  52374936 tgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctcgtat 52374888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 7403203 - 7403246
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttct 214  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  7403203 tgtgttgaatagtgtgtgttaaaatatgtgttgctagaatttct 7403246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 17508914 - 17508828
Alignment:
Q  61 acacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccatg 147  Q
    |||||||||||||||||||||||| | |||  |||||||||||| ||| |  ||||||||||| || ||||||| || | |||||||    
T  17508914 acacacattttaacacatatttttcaccattttctttttgattgattaaatatcacatgagtcccaccaaatcaggtagaatccatg 17508828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 41840576 - 41840625
Alignment:
Q  55 ttagcaacacacattttaacacatattttttaacatactctttttgattg 104  Q
    ||||||||| |||||||||||||||||||| |||| ||||| ||||||||    
T  41840576 ttagcaacatacattttaacacatatttttcaacacactctctttgattg 41840625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 42516565 - 42516598
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgc 204  Q
    ||||||||||||||||||||||||||||||||||    
T  42516565 tgtgttgaaaagtgtgtgttaaaatatgtgttgc 42516598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 15134586 - 15134542
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||||    
T  15134586 tgtgttgaaaaatgtgtgttaaaatttgtgttactagcatttctc 15134542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 16457920 - 16457988
Alignment:
Q  72 aacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||| ||||| ||||| ||||| |||||||||||| || |||||||  || ||||||||||||||||    
T  16457920 aacacacattttctaacacactctctttgattggttaaaattcacatggatcccatcaaatcatgtggg 16457988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 21434028 - 21433944
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||||||||||||| | | |||| |||| |||||  ||||||||||| || |||||||  || || |||||||||||||    
T  21434028 tagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtggg 21433944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 993242 - 993361
Alignment:
Q  97 tttgattggttagaactcacatgagtctcatcaaatcatgtgggatccatgcgaattttaaccgatnnnnnnnn-tgtgttgaaaagtgtgtgttaaaat 195  Q
    |||||||||||| || ||||||||||| || |||||||||||||  ||||| ||||| ||||  ||         | ||||| |||||||||||||| ||    
T  993242 tttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcccatgtgaattctaacaaatcaaagagagtttgttggaaagtgtgtgttaagat 993341  T
Q  196 atgtgttgctagcatttctc 215  Q
     |||||||||||||||||||    
T  993342 gtgtgttgctagcatttctc 993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 2247599 - 2247568
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgtt 202  Q
    ||||||||||||||||||||||||||||||||    
T  2247599 tgtgttgaaaagtgtgtgttaaaatatgtgtt 2247568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 9023901 - 9023976
Alignment:
Q  63 acacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtg 138  Q
    ||||||||||||| | | ||||||||| ||  ||||||||||| || || ||||||||||| || |||||||||||    
T  9023901 acacattttaacatacactttttaacacacgttttttgattgggtaaaattcacatgagtcccaacaaatcatgtg 9023976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 32286386 - 32286323
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    ||||||||||| ||| |||| |||||||| |||| ||||||||| |||||||| || |||||||    
T  32286386 tagcaacacacgtttcaacatatatttttcaacacactcttttttattggttaaaattcacatg 32286323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 52374891 - 52374985
Alignment:
Q  46 cgaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    ||||||||  || ||||||||||||||||||| | |||| |||| ||||| |||||| | ||| || |||||||  ||||| ||||| |||||||    
T  52374891 cgaggaatgctaacaacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtggg 52374985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 1338451 - 1338419
Alignment:
Q  172 gtgttgaaaagtgtgtgttaaaatatgtgttgc 204  Q
    |||||||||| ||||||||||||||||||||||    
T  1338451 gtgttgaaaaatgtgtgttaaaatatgtgttgc 1338419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 7403238 - 7403174
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatga 120  Q
    |||||||||| ||||||||||| | | || |||| ||||| |||||||||||| || ||||||||    
T  7403238 tagcaacacatattttaacacacactattcaacacactctctttgattggttaaaattcacatga 7403174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 15134687 - 15134727
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    |||||||||||||||| |||||||| ||||||| |||||||    
T  15134687 tgtgttgaaaagtgtgcgttaaaatgtgtgttgttagcatt 15134727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 16577399 - 16577343
Alignment:
Q  63 acacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    ||||||||||||| | | ||||||| ||| ||| |||||||||||| ||||||||||    
T  16577399 acacattttaacatacactttttaatatattctatttgattggttaaaactcacatg 16577343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 21433993 - 21434033
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||| ||||||||| |||||||||| ||||    
T  21433993 tgtgttgaaaagtgtatgttaaaatgtgtgttgctaccatt 21434033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 34252036 - 34252000
Alignment:
Q  175 ttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  34252036 ttgaaaagtgtatgttaaaatatgtgttgttagcatt 34252000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 4787872 - 4787806
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagt 122  Q
    |||||||||||||||||||| | |||||||||||  |||| |||||||||||| |||||||||||||    
T  4787872 tagcaacacacattttaacatacattttttaacagtctctctttgattggttaaaactcacatgagt 4787806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 17600768 - 17600695
Alignment:
Q  48 aggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgag 121  Q
    |||||| ||| ||||||||||||||||| | |||||| |||||| ||| |||||||||||| ||||||||||||    
T  17600768 aggaatgttaacaacacacattttaacaaacatttttcaacatattctctttgattggttaaaactcacatgag 17600695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 1473599 - 1473698
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccatgcgaatttt 155  Q
    |||||||||||||||||| ||| |||||| |||| ||| | |||||||||||| || ||||||| ||  || |||||||||||||  ||||| |||||||    
T  1473599 tagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccatgtgaatttt 1473698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 5706774 - 5706726
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattg 104  Q
    |||||||||||||||||||||||| |||| |||| ||||| ||||||||    
T  5706774 tagcaacacacattttaacacatacttttcaacacactctctttgattg 5706726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 5706739 - 5706783
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||    
T  5706739 tgtgttgaaaagtatgtgttaaaatgtgtgttgctatcatttctc 5706783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 12731573 - 12731525
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctcgtat 219  Q
    |||||||| |||||||| ||| |||||||||||||| ||||||||||||    
T  12731573 tgtgttgagaagtgtgtattagaatatgtgttgctaacatttctcgtat 12731525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 19711622 - 19711670
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattg 104  Q
    ||||||||||||||||||||||||||||| || |||||| |||| ||||    
T  19711622 tagcaacacacattttaacacatatttttcaatatactcgttttaattg 19711670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 31946938 - 31946978
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  31946938 tgtgttgaaaagtgtgtgttagaatgtgtgttgctagcatt 31946978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 4483487 - 4483530
Alignment:
Q  172 gtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||    
T  4483487 gtgttgaaaagtgcgtgttaaaatgtgtgttgctagtatttctc 4483530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 17390018 - 17390061
Alignment:
Q  172 gtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||| || |||||||||| |||||||||||||||||||    
T  17390018 gtgttgaaaattgcgtgttaaaatgtgtgttgctagcatttctc 17390061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 24691924 - 24691967
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttct 214  Q
    ||||||| ||||||||||||||||| |||||||||| |||||||    
T  24691924 tgtgttggaaagtgtgtgttaaaatgtgtgttgctaacatttct 24691967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 4033144 - 4033075
Alignment:
Q  59 caacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatc 128  Q
    ||||||||||||||||||| | |||| || | ||| | |||||||||||| || ||||| ||||||||||    
T  4033144 caacacacattttaacacacacttttcaatacactatctttgattggttaaaattcacacgagtctcatc 4033075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 9358219 - 9358268
Alignment:
Q  72 aacacatattttttaacatactctttttgattggttagaactcacatgag 121  Q
    |||||||||||||||||||| | | |||||||||||| || |||||||||    
T  9358219 aacacatattttttaacatattatatttgattggttaaaattcacatgag 9358268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 9644929 - 9644892
Alignment:
Q  178 aaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  9644929 aaaaatgtgtgttaaaatatgtattgctagcatttctc 9644892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 9650946 - 9650909
Alignment:
Q  178 aaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  9650946 aaaaatgtgtgttaaaatatgtattgctagcatttctc 9650909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 12731718 - 12731657
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggtta 108  Q
    |||||||  |||||||||| ||| ||||||| |||||  |||| ||||||||||||||||||    
T  12731718 gaggaatgctagcaacacatattataacacacattttccaacacactctttttgattggtta 12731657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 1473634 - 1473594
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
T  1473634 tgtgttgaaaaatgtgtattaaaatgtgtgttgctagcatt 1473594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 12731674 - 12731714
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||| ||| ||||||||| |||||||||||||||||||    
T  12731674 tgtgttggaaaatgtgtgttataatatgtgttgctagcatt 12731714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 38663629 - 38663719
Alignment:
Q  50 gaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||| |||| ||||||||||||||||||||||||| |||| ||||| |||||||||||| || ||||||  ||| || |||||||| ||||    
T  38663629 gaatgttagtaacacacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatggg 38663719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 7444300 - 7444256
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||    
T  7444300 tgtgttgaaaaatgtgtgttaaaatgtgtgttgctagcatttctc 7444256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 5695697 - 5695662
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgcta 206  Q
    ||||||||||||||||||||||||||||||||||||    
T  5695697 tgtgttgaaaagtgtgtgttaaaatatgtgttgcta 5695662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 49403471 - 49403546
Alignment:
Q  71 taacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccat 146  Q
    ||||||| ||||||||||||| | ||| |||||||||| || |||||| |||| |||||||| ||||||| |||||    
T  49403471 taacacacattttttaacatattttttatgattggttaaaattcacataagtcccatcaaattatgtgggttccat 49403546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 34437598 - 34437672
Alignment:
Q  72 aacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccat 146  Q
    |||||| |||||| |||| ||||| |||||||||||| || ||||||| ||| || |||||||||||||| ||||    
T  34437598 aacacacatttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccat 34437672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 4713268 - 4713317
Alignment:
Q  90 tactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    ||||||||||||||||||| || |||||| ||||| ||||||||||||||    
T  4713268 tactctttttgattggttaaaattcacataagtcttatcaaatcatgtgg 4713317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 49822692 - 49822607
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaat 132  Q
    |||||||  |||||||||| ||| ||||||| |||||| |||| ||||| |||||||||||| || |||||||  || ||||||||    
T  49822692 gaggaatgctagcaacacatattataacacacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaat 49822607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 34437717 - 34437761
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||||| |||||||||| |||||||||||| ||||||    
T  34437717 tgtgttgaaaagtgcgtgttaaaatgtgtgttgctagcgtttctc 34437761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 40668939 - 40669003
Alignment:
Q  82 ttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgggatccat 146  Q
    |||||||| ||||| |||||||||||| |||||||||| ||||||  |||| |||||||| ||||    
T  40668939 ttttaacacactctctttgattggttaaaactcacatgggtctcacaaaattatgtgggacccat 40669003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 49822648 - 49822688
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  49822648 tgtgttgaaaaatgtgtgttataatatgtgttgctagcatt 49822688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 21281496 - 21281461
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgcta 206  Q
    ||||||||||||||| ||||||||||||||||||||    
T  21281496 tgtgttgaaaagtgtatgttaaaatatgtgttgcta 21281461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 34437752 - 34437689
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    |||||||||||||||||||||  | |||| |||| ||||| |||||||||||| || |||||||    
T  34437752 tagcaacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatg 34437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 40669049 - 40669091
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||||||  |||||||| |||||||||||||||||||    
T  40669049 tgtgttgaaaagtgt--gttaaaatgtgtgttgctagcatttctc 40669091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 7444401 - 7444445
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||| ||||| ||| |||||||||| ||||||||    
T  7444401 tgtgttgaaaagtgtttgttagaatgtgtgttgctaacatttctc 7444445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 29955022 - 29955106
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||| | ||||||| ||||| |||| |||| ||| |||||||||||||| || ||||||| ||| ||||||||||||||||    
T  29955022 tagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtggg 29955106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 30004176 - 30004260
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||| | ||||||| ||||| |||| |||| ||| |||||||||||||| || ||||||| ||| ||||||||||||||||    
T  30004176 tagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtggg 30004260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 36480862 - 36480778
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||||||||||||||| | |||| ||||| |||| ||||||||| || || ||||||| ||| || |||||||||||||    
T  36480862 tagcaacacacattttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtggg 36480778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 35357301 - 35357364
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    |||||||||||||| ||||| |||||||| |||| ||||| |||||||||||| ||||||||||    
T  35357301 tagcaacacacattctaacaaatatttttcaacacactctctttgattggttaaaactcacatg 35357364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 51541399 - 51541316
Alignment:
Q  57 agcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||| || |||||||||||||| || | ||| |||||||||||||| || ||| ||||||| || |||||||||||||    
T  51541399 agcaacacaccttctaacacatatttttcaatacactttttttgattggttaaaattcagatgagtcccaccaaatcatgtggg 51541316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 31205356 - 31205437
Alignment:
Q  59 caacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||| ||||||||||||||||  |||| ||||| |||||||||||| || | ||||| |||| | |||||||||||||    
T  31205356 caacacacgttttaacacatattttccaacacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtggg 31205437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 37189299 - 37189235
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatga 120  Q
    |||||||||||||||||| | | ||||||||||| ||||| |||||||||||| || ||||||||    
T  37189299 tagcaacacacattttaatatacattttttaacagactctctttgattggttaaaattcacatga 37189235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 14345125 - 14345200
Alignment:
Q  46 cgaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgag 121  Q
    |||| ||| ||||||||||| |||||||||||||||||| |||| ||| | |||||||||||| ||  ||||||||    
T  14345125 cgagaaatgttagcaacacatattttaacacatatttttcaacacactttctttgattggttaaaatccacatgag 14345200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 1753333 - 1753383
Alignment:
Q  89 atactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    |||||||||||||||||||| || | |||||||| ||||||||||||||||    
T  1753333 atactctttttgattggttaaaatttacatgagtttcatcaaatcatgtgg 1753383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 14345170 - 14345124
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctcgt 217  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||||    
T  14345170 tgtgttgaaaaatatgtgttaaaatatgtgttgctaacatttctcgt 14345124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 36480829 - 36480867
Alignment:
Q  173 tgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  36480829 tgttgaaaagtgtgtgttaaaatgtgtgttgctagcatt 36480867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 32880985 - 32881064
Alignment:
Q  60 aacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    ||||||||||||| |||| |||||| ||||||||||  |||||||||||  | ||||||| ||| ||  |||||||||||    
T  32880985 aacacacattttatcacacatttttcaacatactctccttgattggttaatattcacatgggtcccacaaaatcatgtgg 32881064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 3901499 - 3901565
Alignment:
Q  72 aacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtg 138  Q
    ||||||||||||| |||| | ||| |||||||||||| || ||||||| ||| || |||||||||||    
T  3901499 aacacatatttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 35415091 - 35415129
Alignment:
Q  173 tgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  35415091 tgttgaaaagtgtgtgttaaaatgtgtgttgttagcatt 35415129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 3901635 - 3901566
Alignment:
Q  69 tttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtg 138  Q
    ||||||||| | |||| |||| ||||| |||||||||||| || ||||||| ||| || |||||||||||    
T  3901635 tttaacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 36046329 - 36046362
Alignment:
Q  56 tagcaacacacattttaacacatattttttaaca 89  Q
    |||||||||||||||||||||||| |||||||||    
T  36046329 tagcaacacacattttaacacatactttttaaca 36046362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 48543511 - 48543454
Alignment:
Q  82 ttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    |||||| | ||||| ||| |||||||| || |||||||||||||||||||||| ||||    
T  48543511 ttttaatacactctctttaattggttaaaattcacatgagtctcatcaaatcacgtgg 48543454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 26986312 - 26986272
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||| | |||||||||||||||||||| ||||    
T  26986312 tgtgttgaaaagtatatgttaaaatatgtgttgctaacatt 26986272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 36046363 - 36046323
Alignment:
Q  172 gtgttgaaaagtgtgtgttaaaatatgtgttgctagcattt 212  Q
    ||||| |||||| ||||||||||| ||||||||||||||||    
T  36046363 gtgttaaaaagtatgtgttaaaatgtgtgttgctagcattt 36046323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 36480726 - 36480682
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||| |||| |||||||||||| ||||||| |||||||||||    
T  36480726 tgtgttggaaagggtgtgttaaaatgtgtgttgttagcatttctc 36480682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 18719708 - 18719799
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||  |||||||||||||| ||||||||  |||| |||| |||||||||||||||||| || ||||| ||||  || |||||||||||||    
T  18719708 gaggaatgctagcaacacacattctaacacat--ttttcaacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtggg 18719799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 42094357 - 42094274
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||||||||||||||| | |||| |||| || || |||||||||||| || ||||||| ||| || |||||||||||||    
T  42094357 tagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacatg-gtcccaccaaatcatgtggg 42094274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 42094322 - 42094362
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  42094322 tgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcatt 42094362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 12703456 - 12703535
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcat 135  Q
    |||||||||||||||||||||| |||||| || | ||| | ||||||||||||  | ||||||||||  |||||||||||    
T  12703456 tagcaacacacattttaacacacatttttcaatacactttctttgattggttaatattcacatgagttccatcaaatcat 12703535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 16209498 - 16209539
Alignment:
Q  174 gttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  16209498 gttgaaaagtgtatgttagaatatgtgttgctagcatttctc 16209539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 1469730 - 1469786
Alignment:
Q  63 acacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    |||||||||||||||||||||| |||| ||||| ||| |||||||| || |||||||    
T  1469730 acacattttaacacatatttttcaacacactctatttaattggttaaaattcacatg 1469786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 3466551 - 3466479
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    |||||||  |||||||||||||||||||||| | |||  |||||| ||| |||||||||||| || |||||||    
T  3466551 gaggaatgctagcaacacacattttaacacacactttcaaacatagtctctttgattggttaaaattcacatg 3466479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 25666918 - 25666962
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||    
T  25666918 tgtgttgaaaattgtatgttaaaatgtgtgttgctagcatttctc 25666962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 6979116 - 6979150
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgct 205  Q
    ||||||||||||||||||||||||| |||||||||    
T  6979116 tgtgttgaaaagtgtgtgttaaaatgtgtgttgct 6979150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 30841130 - 30841085
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttga 101  Q
    |||||| ||||||| ||||||||||||||||||| ||||| |||||    
T  30841130 tagcaatacacattataacacatattttttaacacactctctttga 30841085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 44487163 - 44487216
Alignment:
Q  82 ttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcat 135  Q
    ||||||| |||| | |||||||||||| || |||||||||||||| ||||||||    
T  44487163 ttttaacttactatctttgattggttaaaattcacatgagtctcaccaaatcat 44487216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 3466515 - 3466547
Alignment:
Q  179 aaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||| |||||||||||||||    
T  3466515 aaagtgtgtgttaaaatgtgtgttgctagcatt 3466547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 9430288 - 9430228
Alignment:
Q  60 aacacacattttaacacatattttttaacatactctttttgattggttagaactcacatga 120  Q
    |||||||||| ||||||| | |||| |||||| ||| |||||||||||| || ||||||||    
T  9430288 aacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacatga 9430228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 15194519 - 15194595
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaat 132  Q
    |||||||||| ||||||||| | | |||| | || |||||||||||||||||| || ||||||| ||| || |||||    
T  15194519 tagcaacacaaattttaacatacacttttcagcacactctttttgattggttaaaagtcacatgggtcgcaccaaat 15194595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 30841009 - 30841045
Alignment:
Q  72 aacacatattttttaacatactctttttgattggtta 108  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  30841009 aacacacattttctaacatactctttttgattggtta 30841045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 35715097 - 35715137
Alignment:
Q  175 ttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||| ||||||| ||||||||| |||||||||    
T  35715097 ttgaaaagtgtgtcttaaaatgtgtgttgctggcatttctc 35715137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 38835361 - 38835333
Alignment:
Q  186 gtgttaaaatatgtgttgctagcatttct 214  Q
    |||||||||||||||||||||||||||||    
T  38835361 gtgttaaaatatgtgttgctagcatttct 38835333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 33029513 - 33029469
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  33029513 tgtgttgaaaagtatatgttaaaatatgtgttgctagcatttctc 33029469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 41169510 - 41169554
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  41169510 tgtgttgaaaaatgtgtgttaaaatatgtgttactagcatttctc 41169554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 4158218 - 4158149
Alignment:
Q  72 aacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggga 141  Q
    |||||| ||||||||| ||||||| |||||||||||| || ||||| || || |||||||| ||||||||    
T  4158218 aacacacattttttaatatactctctttgattggttaaaattcacacgaatcccatcaaattatgtggga 4158149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 35244940 - 35244989
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctcgtatc 220  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||| ||||    
T  35244940 tgtgttgacaagtgtatgttaaaatgtgtgttgctagcatttctcttatc 35244989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 3907675 - 3907631
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||    
T  3907675 tgtgttgaaaagtgtttgttagaatgtgtgttgctagcatttctc 3907631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 4190181 - 4190225
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||    
T  4190181 tgtgttgaaaagtgtgtgttagaatgtatgttgctagcatttctc 4190225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 9999795 - 9999829
Alignment:
Q  181 agtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||| |||||||||||||||||||    
T  9999795 agtgtgtgttaaaatgtgtgttgctagcatttctc 9999829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 25545204 - 25545267
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgag 121  Q
    |||||| ||||||||||||||| |||||| |||| ||||  |||||||||||| || |||||||||    
T  25545204 tagcaatacacattttaacacacatttttcaacacactc--tttgattggttaaaattcacatgag 25545267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 26608579 - 26608621
Alignment:
Q  173 tgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||| |||||| ||||||||||||||||| ||||||||    
T  26608579 tgttgaaaaatgtgtgataaaatatgtgttgctaacatttctc 26608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 36059360 - 36059278
Alignment:
Q  58 gcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||||| ||||||||| |||  |||| ||| | |||||||||||| || | |||||  || ||||||||||||||||    
T  36059360 gcaacacacattctaacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtggg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 42420173 - 42420107
Alignment:
Q  55 ttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgag 121  Q
    ||||||||||||||| ||| |||   |||| |||| ||||| |||||||||||| ||||||||||||    
T  42420173 ttagcaacacacattctaaaacacgcttttcaacacactctatttgattggttaaaactcacatgag 42420107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 18247868 - 18247901
Alignment:
Q  179 aaagtgtgtgttaaaatatgtgttgctagcattt 212  Q
    |||||||||||||||||||||||| |||||||||    
T  18247868 aaagtgtgtgttaaaatatgtgttactagcattt 18247901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 38029531 - 38029607
Alignment:
Q  60 aacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    |||||||||| ||||||| |||||  |||| |||   |||||||||||| || ||||||| |||||| ||||||||||||    
T  38029531 aacacacattctaacacacattttccaacacact---tttgattggttaaaattcacatgggtctcaccaaatcatgtgg 38029607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 40927728 - 40927773
Alignment:
Q  173 tgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctcgta 218  Q
    ||||||||| | ||||||| ||| ||||||||||||||||||||||    
T  40927728 tgttgaaaaatttgtgttataatgtgtgttgctagcatttctcgta 40927773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 3450178 - 3450222
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||||||||||||| || |||||||||  ||||||||    
T  3450178 tgtgttgaaaagtgtgtgttaacatgtgtgttgctgacatttctc 3450222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 17474893 - 17474933
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  17474893 tgtgttgaaaagtgtgtgttaaaatgtatgttgttagcatt 17474933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 25545239 - 25545199
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatt 211  Q
    ||||||||||| ||||||||||||| ||| |||||||||||    
T  25545239 tgtgttgaaaaatgtgtgttaaaatgtgtattgctagcatt 25545199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 27195379 - 27195415
Alignment:
Q  179 aaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  27195379 aaagtgtgtgttaaaatgtgtgttactagcatttctc 27195415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 215
Target Start/End: Complemental strand, 36059212 - 36059184
Alignment:
Q  187 tgttaaaatatgtgttgctagcatttctc 215  Q
    |||||||||||||||||||||||||||||    
T  36059212 tgttaaaatatgtgttgctagcatttctc 36059184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 5443684 - 5443622
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacat 118  Q
    |||||||||||||| ||||||| |||||| |||||||| | |||||||||||| || ||||||    
T  5443684 tagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacat 5443622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 5452729 - 5452667
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacat 118  Q
    |||||||||||||| ||||||| |||||| |||||||| | |||||||||||| || ||||||    
T  5452729 tagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacat 5452667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 26327772 - 26327809
Alignment:
Q  175 ttgaaaagtgtgtgttaaaatatgtgttgctagcattt 212  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26327772 ttgaaaagtatgtgttaaaatatgtgttgctagcattt 26327809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 26863077 - 26862984
Alignment:
Q  47 gaggaatcttagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||  |||||||||||||||||| ||| | |||| | || ||||| ||| |||||||| || ||||||| ||| || |||||||||||||    
T  26863077 gaggaatgctagcaacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtggg 26862984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 47497852 - 47497771
Alignment:
Q  59 caacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    ||||||||||| ||||||| |||||| || ||| | | |||||||||||| || ||||||||||| || ||||| |||||||    
T  47497852 caacacacattctaacacacatttttcaatatattttctttgattggttaaaattcacatgagtcccaccaaattatgtggg 47497771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 31042154 - 31042115
Alignment:
Q  175 ttgaaaagtgtgtgttaaaatatgtgttgctagcatttct 214  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31042154 ttgaaaagtgtgtgttaaaatatgtgttgctgccatttct 31042115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 31042458 - 31042395
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatg 119  Q
    |||||||||| ||||||||| | | ||||||| ||||||| |||||||||||| ||||| ||||    
T  31042458 tagcaacacatattttaacatacactttttaatatactctctttgattggttaaaactcgcatg 31042395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 3235570 - 3235532
Alignment:
Q  179 aaagtgtgtgttaaaatatgtgttgctagcatttctcgt 217  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  3235570 aaagtgtgtgttaaaatgtgtgttgttagcatttctcgt 3235532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 12275858 - 12275900
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttc 213  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||    
T  12275858 tgtgttggaaagtgtgtgttagaatgtgtgttgctagcatttc 12275900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 3235546 - 3235619
Alignment:
Q  59 caacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaat 132  Q
    ||||||||||||||||||| | |||  || | ||||| |||||||||||| || ||||||||| | ||||||||    
T  3235546 caacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacccatcaaat 3235619  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 40134504 - 40134553
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctcgtatc 220  Q
    ||||||| ||||||||||||||||| || |||||||||||| ||| ||||    
T  40134504 tgtgttggaaagtgtgtgttaaaatgtgggttgctagcattcctcttatc 40134553  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 46074184 - 46074127
Alignment:
Q  82 ttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtgg 139  Q
    |||||||| ||||| ||| |||||||| || ||||||||||| |||||||||| ||||    
T  46074184 ttttaacacactctctttaattggttaaaattcacatgagtcccatcaaatcacgtgg 46074127  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 5443549 - 5443505
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||||    
T  5443549 tgtgttgaaaagtgtgtgttagaatgtatgttgctaacatttctc 5443505  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 5452594 - 5452550
Alignment:
Q  171 tgtgttgaaaagtgtgtgttaaaatatgtgttgctagcatttctc 215  Q
    ||||||||||||||||||||| ||| | |||||||| ||||||||    
T  5452594 tgtgttgaaaagtgtgtgttagaatgtatgttgctaacatttctc 5452550  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 12275893 - 12275809
Alignment:
Q  56 tagcaacacacattttaacacatattttttaacatactctttttgattggttagaactcacatgagtctcatcaaatcatgtggg 140  Q
    |||||||||||||| ||||||| | |||  |||| ||||| || ||||||||| || ||| ||| ||| || |||||||||||||    
T  12275893 tagcaacacacattctaacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtggg 12275809  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 22044915 - 22044955
Alignment:
Q  172 gtgttgaaaagtgtgtgttaaaatatgtgttgctagcattt 212  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  22044915 gtgttgaaaagtatgtgttaaattgtgtgttgctagcattt 22044955  T

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