View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_33 (Length: 306)
Name: NF20365_low_33
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 1905506 - 1905765
Alignment:
| Q |
37 |
gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtgtata |
136 |
Q |
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| T |
1905506 |
gttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttatttattgcaatattcatcaacatacaacatatgtatata |
1905605 |
T |
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| Q |
137 |
acttggtgtctgtttggattgacggtgagtttgacaaaatcacgcatgttgcgaagattttggcaacacggtgctgccacgattttgtcaaattcacctt |
236 |
Q |
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| T |
1905606 |
acttggtgtctgtttggattgacggtgagtttgacaaaatcacgcatgttgcgaagattttggcaacacggtgcttccacgattttgtcaaattcaccgt |
1905705 |
T |
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| Q |
237 |
gtcttcgcttgatttcaacaaaagctacactttatgcttccctttattaatttccctatg |
296 |
Q |
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| T |
1905706 |
gtcttcgcttgatttcaacaaaagctacactttatgcttccgtttattaatttccttatg |
1905765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 1895631 - 1895860
Alignment:
| Q |
1 |
atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactcttttcaatagaagtagaaggttcacatttattt |
100 |
Q |
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| T |
1895631 |
atgaacaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcacacttttcactagaagtagaaggttcacatttatct |
1895730 |
T |
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| Q |
101 |
attgcaatattcatcaacatacaacatatgtgtataacttggtgtctgtttggattgacggtgagtttgacaaaatcacgcatgttgcgaag-attttgg |
199 |
Q |
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| T |
1895731 |
attgcaattttcattaacattcaacatatttatataacttagtaaatgtttgaattgacggtgagtttgacagaatcacgc-tat----aagaattttgg |
1895825 |
T |
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| Q |
200 |
caacacggtgctgccacgattttgtcaaattcacc |
234 |
Q |
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| T |
1895826 |
caacaaggtgctaccaagattttctcaaattcacc |
1895860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1911087 - 1911166
Alignment:
| Q |
1 |
atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactcttttcaatagaag |
80 |
Q |
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| T |
1911087 |
atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttctccctgtcactcttttcactagaag |
1911166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1884137 - 1884207
Alignment:
| Q |
1 |
atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactctttt |
71 |
Q |
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| T |
1884137 |
atgaacaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttt |
1884207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1890781 - 1890851
Alignment:
| Q |
1 |
atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactctttt |
71 |
Q |
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| T |
1890781 |
atgaacaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttt |
1890851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1878125 - 1878198
Alignment:
| Q |
1 |
atgaacaatcatgtctttattgcttatgcttatgctgttggtacttctgttcttcttcctgtcactcttttcaa |
74 |
Q |
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| T |
1878125 |
atgaacaactatgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcacctttttcaa |
1878198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1902042 - 1902083
Alignment:
| Q |
1 |
atgaacaatcatgtctttattgcttatgcttatgctgttggt |
42 |
Q |
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| T |
1902042 |
atgaacaaccatgtctttattgcttatgcttatgctgttggt |
1902083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 47812728 - 47812762
Alignment:
| Q |
142 |
gtgtctgtttggattgacggtgagtttgacaaaat |
176 |
Q |
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| T |
47812728 |
gtgtatgtttggattgacggtgagtttgacaaaat |
47812762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 20960857 - 20960890
Alignment:
| Q |
147 |
tgtttggattgacggtgagtttgacaaaatcacg |
180 |
Q |
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| T |
20960857 |
tgtttggattggcggtgagtttgacaaaatcacg |
20960890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 38734223 - 38734255
Alignment:
| Q |
147 |
tgtttggattgacggtgagtttgacaaaatcac |
179 |
Q |
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| T |
38734223 |
tgtttagattgacggtgagtttgacaaaatcac |
38734255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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