View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_low_34 (Length: 303)

Name: NF20365_low_34
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_low_34
NF20365_low_34
[»] chr1 (1 HSPs)
chr1 (7-290)||(37525817-37526110)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 37526110 - 37525817
Alignment:
Q  7 atgaagatgataaagaaaggggccctgagagtgaggtgttgtacgtaaaaga----------gagtgagggagatgcttttttcatttacttgaattgaa 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||||||||||||||||||||||||||    
T  37526110 atgaagatgataaagaaaggggccctgagagtgaggtgttgtacgtaaaagaaagagtgagggagagagggagatgcttttttcatttacttgaattgaa 37526011  T
Q  97 ttgaaatgaaaggcaaataataacacaaatactacataacagtggtggcaatcatgttgacaagaccactgcacctcttttatgcagactacagagcttg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37526010 ttgaaatgaaaggcaaataataacacaaatactacataacagtggtggcaatcatgttgacaagaccactgcacctcttttatgcagactacagagcttg 37525911  T
Q  197 catccgtcatccacgaccctactacactatcaatgtgccgtgactgtagacagttttcactgtctcttcttatttgaggtctaaccattgttgt 290  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525910 catccgtcatccacgaccctactactctatcattgtgccgtgactgtagacagttttcactgtctcttcttatttgaggtctaaccattgttgt 37525817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University