View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_35 (Length: 302)
Name: NF20365_low_35
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 54182015 - 54181737
Alignment:
| Q |
18 |
gtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttatttccaatagcttcctagtcgatcttccaa |
117 |
Q |
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| T |
54182015 |
gtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttatttccaatagcttcctagtcgatcatccaa |
54181916 |
T |
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| Q |
118 |
ctgaaaatggataagaagttacaacaaggctcggcttggtctgacttacttaaaagaagataggtcaaacagtgttgttaaaaagcttatctttttattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54181915 |
ctgaaaatggataagaagttacaacaaggctcggcttggtctgacttacttaaaagaagataggtcaaacagtgttgttaaaaagcttatctttttattc |
54181816 |
T |
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| Q |
218 |
ttttatatatagaaactatatatgagtaacttttcaagtgggagaactttgataatttgatctgttttagtattattta |
296 |
Q |
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| T |
54181815 |
ttttatatatagaaactatatatgagtaacttttcaagtgggagaactttgataatttgatctgttttattattattta |
54181737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 6224580 - 6224508
Alignment:
| Q |
18 |
gtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtccaatatttattt |
90 |
Q |
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| T |
6224580 |
gtatattatcaaacatcgtatatttgttggaattgaaaacttgttttacttatgtgtggtccattatttattt |
6224508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19748537 - 19748475
Alignment:
| Q |
18 |
gtatattatcaaacatcatatgtttgttggaattgaaaacttgttttacgtatgtgtggtcca |
80 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19748537 |
gtatattatcaaacatcatatatttgttggaattgaaaacttgttttacttatgtgtggtcca |
19748475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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