View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_43 (Length: 270)
Name: NF20365_low_43
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_43 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 21264846 - 21264617
Alignment:
| Q |
1 |
aactttgctcatttgaggtctgtgaaatgctgcaatggaaatcctctcnnnnnnngagttcaccattgctcgatgttcgatgcttcgataaactccattg |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
21264846 |
aactttgctcatttgaggtctgtgaaatgatgcaatggaaatcctctctttctttgagttcaccgtagctcgatgttcgatgcttcgataaactccgttg |
21264747 |
T |
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| Q |
101 |
gttagtatctgcataaccatttaagatgaggtcatagtaattcttaaacttcatagtgttctgttattttcatttgtaaggctatgacaacatatccctt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264746 |
gttagtatctgcacaaccatttaagatgaggtcatagtaattcttaaacttcatagtgttctgttattttcatttgtaaggctatgacaacatatccctt |
21264647 |
T |
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| Q |
201 |
ttttgggacattgcccaaattagttctaaa |
230 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
21264646 |
ttttgggacattgcccaaattaggtctaaa |
21264617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 22929447 - 22929297
Alignment:
| Q |
1 |
aactttgctcatttgaggtctgtgaaatgctgcaatggaaatcctctcnnnnnnngagttcaccattgctcgatgttcgatgcttcgataaactccattg |
100 |
Q |
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||||||||| ||||||||||||||||||||||| | |||||||||||| ||||| || |||||||||||||||| || ||||||| ||| ||| |
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| T |
22929447 |
aactttgcttatttgaggtctgtgaaatgctgctacggaaatcctctctttctccgagttaactgttgctcgatgttcgatactccgataaattccgttg |
22929348 |
T |
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| Q |
101 |
gttagtatctgcataaccatttaagatgaggtcatagtaattcttaaactt |
151 |
Q |
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| T |
22929347 |
gtgattatctgtaaaaccatttaacatgaggtcataatcactcttaaactt |
22929297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 23021602 - 23021717
Alignment:
| Q |
6 |
tgctcatttgaggtctgtgaaatgctgcaatggaaatcctctcnnnnnnngagttcaccattgctcgatgttcgatgcttcgataaactccattggttag |
105 |
Q |
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||||||||||||||||||| || ||| |||| ||||||||||| ||||| | | ||||||||||||||||||||||||| |||||||||||| |
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| T |
23021602 |
tgctcatttgaggtctgtggaaagctacaatagaaatcctctctttctttgagttaattgtagctcgatgttcgatgcttcgataaattccattggttag |
23021701 |
T |
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| Q |
106 |
tatctgcataaccatt |
121 |
Q |
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|||||||| ||||||| |
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| T |
23021702 |
tatctgcacaaccatt |
23021717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 21264525 - 21264490
Alignment:
| Q |
232 |
tgaggtgttatctttgccctggccagtataaggttc |
267 |
Q |
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| T |
21264525 |
tgaggtgttatctttgccttggccagtataaggttc |
21264490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22498 - 22610
Alignment:
| Q |
1 |
aactttgctcatttgaggtctgtgaaatgctgcaatggaaatcctctcnnnnnnngagttcaccattgctcgatgttcgatgcttcgataaactccattg |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||| | || || ||| | ||||||||||| ||||||||||||| |||||| |
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| T |
22498 |
aactttgctcatctgaggtctgtgaaatgcagcaatggaaatcctcgctttctctgaattaaccgtagctcgatgttcaatgcttcgataaattccattt |
22597 |
T |
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| Q |
101 |
gttagtatctgca |
113 |
Q |
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|| | |||||||| |
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| T |
22598 |
gtcaatatctgca |
22610 |
T |
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