View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_45 (Length: 249)
Name: NF20365_low_45
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 18296694 - 18296845
Alignment:
| Q |
17 |
ctcaaaattgctggtgacgaccttcagcaatagtttgttggttctttggcatctaagaaacagctagcctttctttttggacctctttccctttgtatat |
116 |
Q |
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| T |
18296694 |
ctcaaaattgctggtgacgaccttcagcaatagtttgttggttctttggcatctaagaaacagttagcctttctttttggacctctttccctttgtatgt |
18296793 |
T |
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| Q |
117 |
tagaga--------gttttggcagaaataggttaatattaccttgttttagg |
160 |
Q |
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| T |
18296794 |
tagagagagttttggctttggcaggaataggttaatattaccttgttttagg |
18296845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 18297166 - 18297245
Alignment:
| Q |
158 |
agggacgacgtatatctgacccaatcaaaccacgtaaccagcccaaggggacaaaccaattcacgtaccaacaatcctct |
237 |
Q |
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| T |
18297166 |
agggacgacgtatatctgacccaatcaaaccacgtaaccagcccaaggggacaaaccaattcacgtaccaacaatcctct |
18297245 |
T |
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