View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_48 (Length: 237)
Name: NF20365_low_48
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 14264840 - 14264622
Alignment:
| Q |
3 |
tccaatcgagtttctaacccgcgctctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgctgaaggtctcatgaaa |
102 |
Q |
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| T |
14264840 |
tccaatggattttctaactcgcgctctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgttgaaggtctcatgaaa |
14264741 |
T |
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| Q |
103 |
acatacattaaagacgtgctggtggatccaattccaatttgagcatcaatgtttatgtctttgtgtgttttgtatatatttcgagtttctagtttgtata |
202 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14264740 |
acatacattaaagacgtcctggtggatccaattccaatttgagcatcaatgtttatgtctttgtgtgctttgtatatatttcgagtttctagtttgtata |
14264641 |
T |
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| Q |
203 |
aagaaaacttggtgcttct |
221 |
Q |
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||||||||||||||||||| |
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| T |
14264640 |
aagaaaacttggtgcttct |
14264622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 2328717 - 2328865
Alignment:
| Q |
12 |
gtttctaacccgcgctctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgctgaaggtctcatgaaaacatacatt |
111 |
Q |
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||||||||||||||||||||| || |||||||||||||||| |||||| |||| |||||||||| || | | ||||||| || ||||| |||| || |
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| T |
2328717 |
gtttctaacccgcgctctcaaccttgcgcgttttatggatgtagtttacaaagatgaagataactacacacgttctgaaggactaatgaagtcatatatc |
2328816 |
T |
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| Q |
112 |
aaagacgtgctggtggatccaattccaatttgagcatcaatgtttatgt |
160 |
Q |
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| T |
2328817 |
aaagctgttcttgttgatccagttccaatttgatcattaatttttatgt |
2328865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 25834964 - 25835040
Alignment:
| Q |
25 |
gctctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgctgaaggtctcatgaa |
101 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||| || || || ||| ||||||| || ||||| |
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| T |
25834964 |
gctctcaatttttcgcgttttatggatgtgaattacaaagataaagacaattacacacattctgaaggacttatgaa |
25835040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 20602940 - 20602820
Alignment:
| Q |
27 |
tctcaatttttcgcgttttatggatgtgttttacacagataaagataactatactcatgctgaaggtctcatgaaaacatacattaaagacgtgctggtg |
126 |
Q |
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||||||| ||||||||||||||||||| |||||| | | ||||||||||| || || || | || || ||||| |||| |||||||| ||| |||| |
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| T |
20602940 |
tctcaatctttcgcgttttatggatgttatttacaaaaacaaagataactacacggattctaacggactaatgaagacatttattaaagaagtgttggtt |
20602841 |
T |
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| Q |
127 |
gatccaattccaatttgagca |
147 |
Q |
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||||| |||||||||||||| |
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| T |
20602840 |
gatcctgttccaatttgagca |
20602820 |
T |
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