View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20365_low_49 (Length: 235)

Name: NF20365_low_49
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20365_low_49
NF20365_low_49
[»] chr2 (2 HSPs)
chr2 (1-87)||(33412656-33412742)
chr2 (1-77)||(16255764-16255840)
[»] chr8 (2 HSPs)
chr8 (1-87)||(12677536-12677622)
chr8 (1-87)||(33060978-33061061)
[»] chr4 (1 HSPs)
chr4 (1-78)||(32324699-32324776)
[»] chr1 (1 HSPs)
chr1 (1-77)||(750136-750212)
[»] chr7 (4 HSPs)
chr7 (1-83)||(33999805-33999887)
chr7 (6-83)||(39709223-39709300)
chr7 (1-61)||(13412989-13413049)
chr7 (1-45)||(15954471-15954515)
[»] chr3 (1 HSPs)
chr3 (1-82)||(52343898-52343979)
[»] chr5 (2 HSPs)
chr5 (1-77)||(36419208-36419284)
chr5 (1-87)||(26103045-26103131)


Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33412742 - 33412656
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 87  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  || |||||||||||||||||||| ||||||||||||||    
T  33412742 caaaaggtaaaccgaccaaccaagatacaacagtagggtgctatttttgaatagcaccataaaaaagttacataaaattacacaata 33412656  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16255840 - 16255764
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaa 77  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||| |  | |||||||||||||||||| ||||    
T  16255840 caaaaggtaaaccgaccaaccaatatacaacaatagggtgctattttagagtaacaccataaaaaagttacaaaaaa 16255764  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12677536 - 12677622
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 87  Q
    |||||||||||||||  ||||||||||||  |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12677536 caaaaggtaaaccgattaaccaagatacagtagtaaggtgctattttagaagagcaccataaaaaagttacagaaaattacacaata 12677622  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33061061 - 33060978
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 87  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||   ||||| |||||||||| |||||||||    
T  33061061 caaaaggtaaaccgaccaaccaagatacaactgtagggtgctattttagaatagcacc---aaaaaattacagaaaactacacaata 33060978  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32324776 - 32324699
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaat 78  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  32324776 caaaaggtaaaccgaccaactaagatacaacagtagggtgctattttagaatagcaccataaaaaagttacagaaaat 32324699  T

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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 750136 - 750212
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaa 77  Q
    ||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||||    
T  750136 caaaaggtaaaccaaccaaccaagatacaacaataaggtgctattttaaaagagcaccataaaaaagttatagaaaa 750212  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33999887 - 33999805
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacac 83  Q
    ||||||||||||| ||||||||||||||| |||||  ||||||||||||| || |||||||||||||||| ||||||||||||    
T  33999887 caaaaggtaaaccaaccaaccaagatacaacagtaaagtgctattttaaatgaacaccataaaaaagttatagaaaattacac 33999805  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 39709223 - 39709300
Alignment:
Q  6 ggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacac 83  Q
    |||||||| |||||||| |||||| ||||  |||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  39709223 ggtaaaccaaccaaccaggatacaacagtcaggtgctattttaaatgagcaccgtaaaaaagttatagaaaattacac 39709300  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 13413049 - 13412989
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccata 61  Q
    ||||||||||||||||||| |||||||||  ||||||||| ||||||| ||||||||||||    
T  13413049 caaaaggtaaaccgaccaatcaagatacaggagtagggtgatattttagaagagcaccata 13412989  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15954515 - 15954471
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctatt 45  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||    
T  15954515 caaaaggtaaaccgaccaaccaaaatacaacagtagggtgctatt 15954471  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52343898 - 52343979
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattaca 82  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||| || |||||||||||||||||||| |||| ||||    
T  52343898 caaaaggtaaacctaccaaccaaaatacaacagtagggtgctattttagaatagcaccataaaaaagttacaaaaaactaca 52343979  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36419208 - 36419284
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaa 77  Q
    ||||||||||||||||||| ||| ||||| ||||||||||||| |||| |  | |||| ||||||||||||| ||||    
T  36419208 caaaaggtaaaccgaccaatcaaaatacaacagtagggtgctaatttagagtaacaccgtaaaaaagttacaaaaaa 36419284  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26103131 - 26103045
Alignment:
Q  1 caaaaggtaaaccgaccaaccaagatacatcagtagggtgctattttaaaagagcaccataaaaaagttacagaaaattacacaata 87  Q
    |||| ||||| || ||| ||||| ||||| ||||| ||| || || |||| ||||||||| ||||||||| ||||||||||||||||    
T  26103131 caaagggtaagccaacctaccaaaatacaacagtaaggttctgttctaaaggagcaccatcaaaaagttaaagaaaattacacaata 26103045  T

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