View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_5 (Length: 562)
Name: NF20365_low_5
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 19003556 - 19003817
Alignment:
| Q |
1 |
aataggtggaatgtaagaagtttcttcatctcatccaagggttgaaatccaaaagtgatagtgagaaatagagttctagcagtcctctttannnnnnnnn |
100 |
Q |
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| T |
19003556 |
aataggtggaatgtaagaagtttcttcatctcatccaagggttgaaatccaaaagtgatagtgagaaatagagttctagcagtcctctttaagagaaaga |
19003655 |
T |
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| Q |
101 |
nnnttttgtttcaatcatagatttttgagagttgagaaatatcatcttgtatcaaaagagaaactgtaattataattttttatagtggagatattttact |
200 |
Q |
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| T |
19003656 |
gagttttgtttcaatcatagatttttgagagttgagaaatatcatcttgtatcaaaagagaaactgtaattataattttttatagtggagatattttact |
19003755 |
T |
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| Q |
201 |
ggaccggctcatgtggtatttccctttcacagtgagaggattcgtgaaaattcttggtgtga |
262 |
Q |
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| T |
19003756 |
ggaccagctcatgaggtatttccctttcacagtgagaggattcgtgaaaattcttggtgtga |
19003817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 291 - 547
Target Start/End: Original strand, 19003846 - 19004104
Alignment:
| Q |
291 |
cttccgattagtgccaactttaaattcagagaggatggaaattatgcatacatttcccaataatggaatcaaatatcttggagctttgggatgttaatgc |
390 |
Q |
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| T |
19003846 |
cttccgattagtgccaactttaaattcagagaggatggaaattatgcatgcatttctcaatagtggtatcaaatatcttggagctttgggatgttaatgc |
19003945 |
T |
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| Q |
391 |
gtcatattcgcaataaaaagttt--agtatgctttgtaactgcaacattgtttgatttttcatatgaaaaaagaaatattattgtttaataaaatagcgt |
488 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
19003946 |
gtcatattcgcaataaaaagtttttaatatgctttgtaactgcaacattgtttgatctttcacatgaaaaaagaaatattattgttgaacaaaatagcgt |
19004045 |
T |
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| Q |
489 |
cttgtataacttaagatagagttttatcactcatggtgaaaatatgttcaggctaaagt |
547 |
Q |
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| T |
19004046 |
cttgtataacttaagatagagttttatcactcatggtggaaatatgttcaggctaaagt |
19004104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 29435373 - 29435439
Alignment:
| Q |
10 |
aatgtaagaagtttcttcatctcatccaagggttgaaatccaaaagtgatagtgagaaatagagttc |
76 |
Q |
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| T |
29435373 |
aatgtgagaagtttcatcatccaatccaagaattgaaatccaaaagagatagtgagaaatagagttc |
29435439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 31477965 - 31478006
Alignment:
| Q |
49 |
ccaaaagtgatagtgagaaatagagttctagcagtcctcttt |
90 |
Q |
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| T |
31477965 |
ccaatagtgatagtgagaaagagagttctagcagtcctcttt |
31478006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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