View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_50 (Length: 235)
Name: NF20365_low_50
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 4622127 - 4621902
Alignment:
| Q |
5 |
ccaggaaatgtggttgtgtcatcttctcttgaatttattttattgtcnnnnnnntaatgatgcatagtgtgaggtgctagttatatttaaaatgtaagcc |
104 |
Q |
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| T |
4622127 |
ccaggaaatgtggttgtgtcatcttctcttgaatttattttattgtcaaaaaaataatgatgcatagtgtgaggtgctagttatatttaaaatctaagcc |
4622028 |
T |
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| Q |
105 |
atataaatgtaacttattatgtcattttagttcaatagaaataacgatacatataattgtatgaaattcatttacatatatactgataacagttatgatc |
204 |
Q |
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| T |
4622027 |
atataaatgtaacttattatgtcattttagttcaatagaaataatgatacatataattgtatgaaattcatttacatatatactgataacagttatgatc |
4621928 |
T |
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| Q |
205 |
tacacatttcatctatctgtgctgct |
230 |
Q |
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| T |
4621927 |
tacacatttcatctatctgtgttgct |
4621902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 4256768 - 4256936
Alignment:
| Q |
9 |
gaaatgtggttgtgtcatcttctcttgaatttattttattgtcnnnnnnntaatgatgcat--agtgtgaggtgctagttatatttaaaatgtaagccat |
106 |
Q |
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| T |
4256768 |
gaaatgtggttgtgtaatctcctcttgaatttgttttattgtcaaaaaat--atgatgcatttagtgtgaggtgcttgttatatttaaatta-aagccat |
4256864 |
T |
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| Q |
107 |
ataaatgtaacttattatgtcattttagttcaatagaaataacgatacatataattgtatgaaattcatttac |
179 |
Q |
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| T |
4256865 |
ttag-tatgacttattatgtgattttggttcaatataaataatgtttcatataattgtatgaaattcagttac |
4256936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 4267320 - 4267491
Alignment:
| Q |
7 |
aggaaatgtggttgtgtcatcttctcttgaatttattttattgtcnnnnnnntaatgatgcat--agtgtgaggtgctagttatatttaaaatgtaagcc |
104 |
Q |
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| T |
4267320 |
aggaattgtagttgtgtaatctcctcttgaatttgttttattgtcaaaaaat--atgatgcatttagtgtgaggtgcttgttatatttaaaataaaagcc |
4267417 |
T |
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| Q |
105 |
atataaatgtaacttattatgtcattttagttcaatagaaataacgatacatataattgtatgaaattcatttac |
179 |
Q |
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| T |
4267418 |
atttag-tatgatttattatgtgattttggttcaatataaataatgtttcatataattgtatgaaattcagttac |
4267491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 4299985 - 4300067
Alignment:
| Q |
90 |
tttaaaatgtaagccatataaatgtaacttattatgtcattttagttcaatagaaataacgatacatataattgtatgaaatt |
172 |
Q |
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| T |
4299985 |
tttaaattgtaagccatataaatatgatttattatgttatttgagttcaatataaataatgatacttatatttgtatggaatt |
4300067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 4260349 - 4260387
Alignment:
| Q |
74 |
tgaggtgctagttatatttaaaatgtaagccatataaat |
112 |
Q |
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| T |
4260349 |
tgaggtgcttgttatatttaaaatgtaaaccatataaat |
4260387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 24102950 - 24102840
Alignment:
| Q |
69 |
tagtgtgaggtgctagttatatttaaaatgtaagccatataaatgtaacttattatgtcattttagttcaatagaaataacgatacatataattgtatga |
168 |
Q |
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| T |
24102950 |
tagtgtgaggtgctagttctatttaaaatgtaaaccatataagtatgacttattatgtgattttggttcaatataaataatgtttcgtataattgtatgg |
24102851 |
T |
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| Q |
169 |
aattcatttac |
179 |
Q |
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| T |
24102850 |
aattcaattac |
24102840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 24109397 - 24109282
Alignment:
| Q |
69 |
tagtgtgaggtgctagttatatttaaaatgtaagccatataaatgtaacttattatg-----tcattttagttcaatagaaataacgatacatataattg |
163 |
Q |
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| T |
24109397 |
tagtgtgaggtgctggttatatttaaaatgtaagccatataagtatgacttattatgtgatttaattttagttcaacataaataatgtttcatataactt |
24109298 |
T |
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| Q |
164 |
tatgaaattcatttac |
179 |
Q |
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| T |
24109297 |
tatgaaattcagttac |
24109282 |
T |
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