View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_52 (Length: 226)
Name: NF20365_low_52
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36919973 - 36919751
Alignment:
| Q |
1 |
ctcttatgtttatgttttcaatttttcttcaactatctagttgcattagctttcaaagttggtgtttggagtgtgatagttgactgnnnnnnnnnnnnnn |
100 |
Q |
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| T |
36919973 |
ctcttatgtttatgttttcaatttttcttcaactatctagttgcattagttttcaaagttggtgtttggagtgtgatagttgactgaaaaaaacaaaaa- |
36919875 |
T |
|
| Q |
101 |
taaatatttgtactaatattgaagaaaatgatggtccaaagtatgaatttaaagcattgagaatcccaattaagaggatagagatatgactatataggct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36919874 |
taaatatttgtactaatattgaagaaaatgatggtccaaagtatgaatttaaagcattgagaatcccaattaagaggatagagatatgactatataggct |
36919775 |
T |
|
| Q |
201 |
tgtagctttctctctgctcctcct |
224 |
Q |
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||||||||||| |||| ||||||| |
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| T |
36919774 |
tgtagctttctttctgttcctcct |
36919751 |
T |
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