View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_58 (Length: 206)
Name: NF20365_low_58
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_58 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 1763076 - 1763247
Alignment:
| Q |
17 |
ggtgattcaagagacattgaggctttatccaccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatccaaattccaaaagga |
116 |
Q |
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| T |
1763076 |
ggtgattcaagagacattgaggctttatccaccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatccaaattccaaaagga |
1763175 |
T |
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| Q |
117 |
atgaatcttcaaattccaatgccaatattgcatcaagacccagagctttggggacatgatgcacataagttc |
188 |
Q |
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| T |
1763176 |
atgaatcttcaaattccaatgccaatattgcatcaagacccagagctttggggacatgatgcacataagttc |
1763247 |
T |
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Target: scaffold0147 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 10409 - 10464
Alignment:
| Q |
93 |
aaaggtatccaaattccaaaaggaatgaatcttcaaattccaatgccaatattgca |
148 |
Q |
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| T |
10409 |
aaaggtatcaaagttccaaaaggaatgaatattcagattccaatcccaatattgca |
10464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 10333 - 10369
Alignment:
| Q |
17 |
ggtgattcaagagacattgaggctttatccaccagca |
53 |
Q |
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| T |
10333 |
ggtgattcaagagactttgaggctttatccgccagca |
10369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 19208073 - 19208109
Alignment:
| Q |
17 |
ggtgattcaagagacattgaggctttatccaccagca |
53 |
Q |
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| T |
19208073 |
ggtgattcaagagactttgaggctttatccaccagca |
19208109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 19208135 - 19208211
Alignment:
| Q |
79 |
aagacattaatttcaaaggtatccaaattccaaaaggaatgaatcttcaaattccaatgccaatattgcatcaagac |
155 |
Q |
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| T |
19208135 |
aagatattaatttaaaaggtatcaaagttccaaaaggaattaatatgcagattccaattgcgatattgcaacaagac |
19208211 |
T |
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