View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_7 (Length: 501)
Name: NF20365_low_7
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 15248731 - 15248264
Alignment:
| Q |
19 |
atattgaaggatactaaccgtaaatgtaataattacgatatataaaatagttgaatgattcgtcaaaaaatatagtaaaatgattatagcatttcatatt |
118 |
Q |
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| T |
15248731 |
atattgaaggatactaaccgtaaatgtaataattacgatatataaaatagttgaacgattcgtcaaaaaatatagtaaaatgattatagcatttcatatt |
15248632 |
T |
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| Q |
119 |
tcgttttataaatataaagacatatttcttacccattctacgaagaaatgacnnnnnnnatctcctgataaacctggaaatacctgccaccaatgtggaa |
218 |
Q |
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| T |
15248631 |
tcgttttataaatataaagacatatttcttacccattctacgaagaaatgactttttttatctcctgacaaacctggaaatacctgccaccaatgtggaa |
15248532 |
T |
|
| Q |
219 |
gagattagcgattgttaacggtgagcgagtggtttctaggtgaattcacctacgtggttaaacgatgttacatgaactcattctacgtagattgaattca |
318 |
Q |
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| T |
15248531 |
gagattagcgattgttaacggtgagggagtggtttctaggtgaactcacctacgtggttaagcgatgttacatgaactcaatctacgtagattgaattca |
15248432 |
T |
|
| Q |
319 |
c----ctacgtggttaagcgatgttacatgaactcaatctacgtagattgaaattaacatagcttacgtattgtgaacttagaatgagataaaattaaag |
414 |
Q |
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| T |
15248431 |
cctagctacgtggttaagcgatgttacatgaactcaatctacgtagattgaaattaacatagcctacgtattgtgaacttataatgagataaaattagag |
15248332 |
T |
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| Q |
415 |
aaaaacctgccatccagcatggataaacatatggtcatttacgggagtatcagtttctccactagaaa |
482 |
Q |
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| T |
15248331 |
aaaaacctgccatcctgcatggatatacatatggtcatttacgggagtatcggtttctccactagaaa |
15248264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 449
Target Start/End: Complemental strand, 15229574 - 15229530
Alignment:
| Q |
405 |
aaaattaaagaaaaacctgccatccagcatggataaacatatggt |
449 |
Q |
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| T |
15229574 |
aaaattaaagaaaaacctgccaccctgcatggataaacatatggt |
15229530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 15230538 - 15230503
Alignment:
| Q |
134 |
aaagacatatttcttacccattctacgaagaaatga |
169 |
Q |
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| T |
15230538 |
aaagacatatttcttacccattctacgaagaaatga |
15230503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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