View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20365_low_8 (Length: 474)
Name: NF20365_low_8
Description: NF20365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20365_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3331887 - 3331666
Alignment:
| Q |
1 |
gcttttaggagattcaactgctccactttttcaagctatgcctcctcctaattctaatcctaatcttaatcctaatcttctcggtcagatgccttctgat |
100 |
Q |
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| T |
3331887 |
gcttttaggagattcaactgctccactttttcaagctatgcatcctcctaattctaatcctaatcttaatcctaatcttctcggtcagatgccttctgat |
3331788 |
T |
|
| Q |
101 |
aatttctggccaaccgggcgttctccgtattgatcatgatgatattattgcaaagctatcattgttgggaacaaatgttgcaagaaggaaggaattggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331787 |
aatttctggccaaccgggcgttctccgtattgatcatgatgacattattgcaaagctatcattgttgggaacaaatgttgcaagaaggaaggaattggaa |
3331688 |
T |
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| Q |
201 |
gctagggaattcgatgatgagg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3331687 |
gctagggaattcgatgatgagg |
3331666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 294 - 447
Target Start/End: Complemental strand, 3331594 - 3331441
Alignment:
| Q |
294 |
ggttctaggtgagttgatgtatgttgaatttgagactgtaattaaattgatgtatccttattattattatctatcctcggtgagtttgtttaattttatt |
393 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331594 |
ggttctaggtgagttgatgtatgctgaatttgagactgtaattaaattgatgtatccttattattattatctatcctcggtgagtttgtttaattttatt |
3331495 |
T |
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| Q |
394 |
ctatattctgtgagaggatcaataaaattagtactttggtgcatttaattccta |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331494 |
ctatattctgtgagaggatcaataaaattagtactttggtgcatttaattccta |
3331441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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