View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20366_high_2 (Length: 439)
Name: NF20366_high_2
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 346
Target Start/End: Complemental strand, 9516379 - 9516040
Alignment:
| Q |
7 |
gcaccgaggaacctgtcttcgatgatttgatcggaatctagagttaaaacgatgtcgttttgattatttccggtaatgagattggtgaagtcggaatctt |
106 |
Q |
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| T |
9516379 |
gcaccgagaaacctgtcttcgatgatttgatctgagtctagggttaaaacgatgtcgttttgattatttccggtaatgagattggtgaagtcggaatctt |
9516280 |
T |
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| Q |
107 |
caagagaaggaagagaatgtaaataaagcgaaactttacgatagaacatgttcggttgcatggtttggtttagttcggggactttgaggtattggtaaag |
206 |
Q |
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| T |
9516279 |
caagagaaggaagagaatgtaaataaagcgaaactttacgatagaacatgttcggttgcatggtttggtttagttcggggactttgaggtattggtaaag |
9516180 |
T |
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| Q |
207 |
atnnnnnnnntcttgtagttttgtgtggagnnnnnnngttgtgtgtattaaaccagttttgaataatatgtatcgaattatgaaaagaatgatgggtgtg |
306 |
Q |
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| T |
9516179 |
ataaaaaaaatcttgtagttttttgtggagtttttttgttgtgtgtattaaaccagttttgaataatatgtatcgaattatgaaaagaatgatgggtgtg |
9516080 |
T |
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| Q |
307 |
aggagaataaggattatgaatttgtaagataacatggtag |
346 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |
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| T |
9516079 |
aggggaataaggattatgaatttgtaagataacatggtag |
9516040 |
T |
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