View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20366_high_6 (Length: 327)
Name: NF20366_high_6
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_high_6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 76 - 327
Target Start/End: Complemental strand, 32464862 - 32464611
Alignment:
| Q |
76 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactatgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
175 |
Q |
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| T |
32464862 |
cctccactcattgttgtcaacaagaatagaagtaagtccatttccactacgacgacttgacataatgtcatgagaatacttagaatttgcatcttcttct |
32464763 |
T |
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| Q |
176 |
ccgagtcaaagtaatcgagattgttaccaacaaatacaggtatacaagataaagaatgtaaatcagccgtaaacccatttaacttctccatctcgcctat |
275 |
Q |
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| T |
32464762 |
ccgagtcaaagtaaccgagattgctgccaacaaataccggtatacaagataaagaatgtaaatcagccataaacccatttaactcctccatctcgcctat |
32464663 |
T |
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| Q |
276 |
ataaatactggaaaaaactaaatgctaggactatagtcaatacatagcgatg |
327 |
Q |
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| T |
32464662 |
ataaatactggaaaaaactaaatgctaggactatagtcaatacatagcgatg |
32464611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 32465851 - 32465782
Alignment:
| Q |
14 |
aatatgtgccttgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
83 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32465851 |
aatatgtgctttgaaatgagcaacaaaataagaaaaaacaacactatgcatattacacactccctccact |
32465782 |
T |
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