View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20366_high_8 (Length: 305)
Name: NF20366_high_8
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 33384481 - 33384213
Alignment:
| Q |
3 |
atgctcgattgtgagggagttgggtccttgtttaggtttggtatgtggccttgctacctgtccttattcatagataatagttttagcaaagacaactaat |
102 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33384481 |
atgcttgattgcgagggagttgggtccttgtttaggtttggtatgtggccttgctacctgtccgtattcatagataaaagttttagcaaagacaactaac |
33384382 |
T |
|
| Q |
103 |
cgtcctaagatggatttggcactaaaatattcaagcaaattgcacaatcttggctgaaacgttaaaagtaaaatccagtatagaatttttgtaattccat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384381 |
cgtcctaagatggatttggcactaaaatattcaagcaaattgcacaatcttgattgaaacgttaaaagtaaaatccagtatagaatttttgtaattccat |
33384282 |
T |
|
| Q |
203 |
tcgtgtgcatgaatgacataataccaatatgaatgacaaatgtccaatgtgtcaacaaataggaatgca |
271 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384281 |
tcgtgtgcatgaatggcataataccaatatgaatgacaaatgtccaatgtgtcaacaaataggaatgca |
33384213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 33376120 - 33375874
Alignment:
| Q |
19 |
gagttgggtccttgtttaggtttggtatgtggccttgctacctgtccttattcatagataatagttttagcaaagacaactaatcgtcctaagatggatt |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| || | |||||||||| ||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
33376120 |
gagttaggtccttgtttaggtttggtatgtggccttgctagctct------tcatagataaaagtggtagcaaagacaactagccgtcctaaaatggatt |
33376027 |
T |
|
| Q |
119 |
tggcactaaaatattcaagcaaattgcacaatcttggctgaaacgttaaaagtaaaatccagtatagaatttttgtaattccattcgtgtgcatgaatga |
218 |
Q |
| |
|
||||| || | |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33376026 |
tggcattatagtattcaagcaaattgcacaatcttagctgaaacgttaaaagtatgatgtagtatagaatttatgtaattccattcgtgtgcatgaatgg |
33375927 |
T |
|
| Q |
219 |
cataataccaatatgaatgacaaatgtccaatgtgtcaacaaataggaatgca |
271 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33375926 |
cataatgccaatataaatgacaaatgtccaatgtgtcaacaaataagaatgca |
33375874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 30 - 267
Target Start/End: Complemental strand, 33390560 - 33390317
Alignment:
| Q |
30 |
ttgtttaggtttggtatgtggccttgctacctgtccttattcatagataatagttttagcaaagacaactaatcgtcctaagatggatttggcactaaaa |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| | || | ||||||| ||| ||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
33390560 |
ttgtttaggtttggtctgtggccttgctagctgtcatgatccgtagataaaagtggtagcaaagacaactagccgccctaagatggatttggcactagaa |
33390461 |
T |
|
| Q |
130 |
tattcaagcaaattgcacaatcttggctgaaacgttaaaagtaaaa-----tccagtatagaatttt---tgtaattccattcgtgtgcatgaatgacat |
221 |
Q |
| |
|
|| || |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |||||| |||| ||| |
|
|
| T |
33390460 |
tactcgagcaaattagacaatcttggctgaaacgttaaaagtaaaacccactccagtatagaattttcactgcaattccatt--tgtgcaagaatcgcat |
33390363 |
T |
|
| Q |
222 |
aataccaatatgaatgacaaatgtccaatgtgtcaacaaataggaa |
267 |
Q |
| |
|
| ||| || |||||||||||||||||||||||| |||||||| |
|
|
| T |
33390362 |
gctgtcaacatatatgacaaatgtccaatgtgtcaaccaataggaa |
33390317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University