View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20366_low_1 (Length: 777)
Name: NF20366_low_1
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 40433396 - 40432932
Alignment:
| Q |
1 |
cttgtgatgttaaaaacaatagtgacatcaaatttagtgtgacactggtcttnnnnnnntctgtaaacaaaattctgtatgctctagtgagtaaagaatt |
100 |
Q |
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| T |
40433396 |
cttgtgatgttaaaaacaatagtgacatcaaatttagtgtgacactggtcttaaaaaaatctgtaaacaaaattctgtatgctctagtgagtaaagaatt |
40433297 |
T |
|
| Q |
101 |
tgctgattttttactcagccttctctcatttcctttgggagctgttattcatttattagaagggaaat--------------atggatttgatatacaat |
186 |
Q |
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| T |
40433296 |
tgctgattttttactcagccttctctcatttcctttgggagctgttattcatttattagaagggaaatcttgtgtaggaaatatggatttgatatacaat |
40433197 |
T |
|
| Q |
187 |
agcatacttaagttggatgacagatatatgaaatcaatggattcaaaaaagtggctcattaatccacgcatgggctgtcaatttaagttaagcaaccaga |
286 |
Q |
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| T |
40433196 |
agcatacttaagttggatgacagatatatgagatcaatggattcaaaaaagtggctcattaatccacgcatgggctgtcaatttaagttaagcaaccaga |
40433097 |
T |
|
| Q |
287 |
tttcggaaattgaagaaaagatgccgtattattgttattatcaaggtaataccttcaaagaaagtatcgaccacggagaattttacataaccgatgtatt |
386 |
Q |
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| T |
40433096 |
tttcggaaattgaagaaaagatgccgtattattgttattatcaaggtaataccttcaaagaaagtatcggccatggagaattttacataaccgatgtatt |
40432997 |
T |
|
| Q |
387 |
caagattcttgagaaaaaggttagaaaactgagcttaatcgattattccataccatctaaaggaa |
451 |
Q |
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| T |
40432996 |
caagattcttgagaaaaaggttagaaaactgagcttaatcgattattccataccatctaaaggaa |
40432932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 444 - 762
Target Start/End: Complemental strand, 40432916 - 40432598
Alignment:
| Q |
444 |
taaaggaacatagaacctttttggttacagatgagttggtcttcaaaccatcttgcccaatttcagatttcgagtttttgatgtctctggagattcctct |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40432916 |
taaaggaacatagaacctttttggttacagatgagttggtcttcaaaccatcttgcccaatttcagatttcgagtttttgatgtctctggagattcctct |
40432817 |
T |
|
| Q |
544 |
aaatgacttgaagaacaaggccgtcacttttgggctaaaagaggtaagaaaatcaaaacctctatcaccaatgcattgttatgtgtttggtataataatt |
643 |
Q |
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| T |
40432816 |
aaatgacgtgaagaacaaggccgtcacttttgggctaaaagaggtaagaaaatcaaaacctctatcaccaatgcattgttatgtgtttggtataataatt |
40432717 |
T |
|
| Q |
644 |
gaatgcattattgcctatatctaatggttttgttggtgcagtgtttgaacatattgaaggccgctttaacttctgattctgcactaacaaatggtttgct |
743 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
40432716 |
gaatgcattattgcctatttctaatggttttgttggtgcagtgtttgaacatattgaaggccgctttgacttcagattctgcactaacaaatggtttgct |
40432617 |
T |
|
| Q |
744 |
atgctacattgaccctatg |
762 |
Q |
| |
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||||||||||||||||||| |
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| T |
40432616 |
atgctacattgaccctatg |
40432598 |
T |
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