View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20366_low_2 (Length: 406)
Name: NF20366_low_2
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 53957534 - 53957927
Alignment:
| Q |
1 |
ctaagatcctctttcttagctcccattgattcagctacttttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttcat |
100 |
Q |
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| T |
53957534 |
ctaagatcctctttcttagctcccattgattcagctacttttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttcat |
53957633 |
T |
|
| Q |
101 |
ttgactcnnnnnnngaattttcagaagcaattgcagcaagtgctgctgcaactcctgcaatggacattgctgcatgcacatctgctctttgcaatctttg |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53957634 |
ttgactctttttttgaattttcagaagcaattgcagcaagtgctgctgcaactcctgcaatggacattgctgcatgcacctctgctctttgcaatctttg |
53957733 |
T |
|
| Q |
201 |
ttcttctttcttcttcagctttacttccttaaaccatctctttattgacatacttttcagtggtaatatctgcttccatggcatctacatgatatatgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957734 |
ttcttctttcttcttcagctttacttccttaaaccatttctttattgacatacttttcagtggtaatatctgcttccatggcatctacatgatatatgat |
53957833 |
T |
|
| Q |
301 |
ggtaaataagttatactaatttcaagtgaaataactagtaacgcttgcatgtaactctcaccatgaaactgaatgaaaaatattacgtacccat |
394 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53957834 |
ggtaaataatttatactaatttcaagtgaaataactagtaacgcttgcatgtaactctcaccatgaaactgagtgaaaaatattacgtacccat |
53957927 |
T |
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