View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20366_low_3 (Length: 381)
Name: NF20366_low_3
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 366
Target Start/End: Original strand, 53431709 - 53432059
Alignment:
| Q |
12 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
111 |
Q |
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| T |
53431709 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
53431808 |
T |
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| Q |
112 |
ttgacttttttcttatttaatgaatttgggtgacattgcctgcatttcaaaaataaatgttagtttgtctaactttaaaacattgtggttaattatagga |
211 |
Q |
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| T |
53431809 |
ttgacttttttcttatttaatgaatttgggtgacattgcctgcatttcaaaaataaatgttagtttgtctaactttaaaacattgtgg----ttatagga |
53431904 |
T |
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| Q |
212 |
ttttcattcaccatatatataccttgcttcaactaagtcagcggtagnnnnnnnggcagactctccggttatcaatggatatttggcgtattttgaaagt |
311 |
Q |
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| T |
53431905 |
ttttcattgaccatatatataccttgcttcaactaagtcagcggtagtttttttggcagactctccggttatcaatggatatttggcgtattttgaaagt |
53432004 |
T |
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| Q |
312 |
ggggaataatttatggcttgaccctaaagtacaacaattactaagcataaaaaat |
366 |
Q |
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| T |
53432005 |
ggggaataatttatggcttgaccctaaagtacaacaattactaagcataaaaaat |
53432059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 53424560 - 53424691
Alignment:
| Q |
12 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
111 |
Q |
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| T |
53424560 |
atgaacaagacctaatccacccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacatatgacaatctttcct |
53424656 |
T |
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| Q |
112 |
ttgacttttttcttatttaatgaatttgggtgaca |
146 |
Q |
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| T |
53424657 |
ttgactttgttcgtatctaatgaatttgggtgaca |
53424691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 48374005 - 48373828
Alignment:
| Q |
12 |
atgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatgacaatctttcct |
111 |
Q |
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| T |
48374005 |
atgaacaagacctaatccacccgcctcttgcaccgtcctaattttttcatcggttgaataatcaccatc---taccccatcgcagatgacaatatttcct |
48373909 |
T |
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| Q |
112 |
ttgacttttttcttatttaatgaatttgggtgacattgcctgcatttcaaaaataaatgttagtttgtctaactttaaaaca |
193 |
Q |
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| T |
48373908 |
tcaacttttttcttatctaatgaacttggatgacactgactgcacttcataaa-gaatgttagtttgcctaactttaaaaca |
48373828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 48373716 - 48373636
Alignment:
| Q |
267 |
gcagactctccggttatcaatggatatttggcgtattttgaaagtggggaataatttatggcttgaccctaaagtacaaca |
347 |
Q |
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| T |
48373716 |
gcagactttccagttatcaatggataatcggcagattttgaaagaggggagaaatttatggcttgaccctaaagtacaaca |
48373636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 26096526 - 26096594
Alignment:
| Q |
89 |
catcacaaatgacaatctttcctttgacttttttcttatttaatgaatttgggtgacattgcctgcatt |
157 |
Q |
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| T |
26096526 |
catcacatatgacaatctttcctttgacttttttcttgtctaatgaacttggagaacattgcctacatt |
26096594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 53319799 - 53319837
Alignment:
| Q |
102 |
aatctttcctttgacttttttcttatttaatgaatttgg |
140 |
Q |
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| T |
53319799 |
aatctttcctttgacttttttcttatctagtgaatttgg |
53319837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 26096724 - 26096809
Alignment:
| Q |
266 |
ggcagactctccggttatcaatggatatttggcgtattttgaaagtggggaataatttatggcttgaccctaaagtacaacaatta |
351 |
Q |
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| T |
26096724 |
ggcagattctccagttatcaatggataattaggtgattttgaaagaggagagaagtttatggcttgaccctatagtaaaacaatta |
26096809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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