View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20366_low_4 (Length: 300)
Name: NF20366_low_4
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20366_low_4 |
 | |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 523582 - 523862
Alignment:
| Q |
1 |
tatgtgtcaaaatcataaattgcctagtatgctcgtacatgatgcaacgttttaatgccttaaaaaatggcacaatgctaataatataatcaaggctatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
523582 |
tatgtgtcaaaatcataaattgcctagtatgctcgtacatgatgcaacgttttaatgccttaaaaaatggcacaatactaataatataatcaaggctatt |
523681 |
T |
|
| Q |
101 |
ttggacttttctcataaaattggtgccttttgcatgtttccgttcatagatgtgtggaaagattttgagcttgggtcccacctcaaaactttctttccac |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| | ||| ||||||||||||||||||||| | |
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|
| T |
523682 |
ttagacttttctcataaaattggtgccttttgcatatttccgttcatggatgtgtggaaaggttttgagcgtaggttccacctcaaaactttctttcctc |
523781 |
T |
|
| Q |
201 |
atcttttttatgtgttgtcaaagggtggaaaggtactatgtccagaacctttctttccctatagcctttctttctttaatc |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
523782 |
atcttttttatgtgctgtcaaagggtggaaaggtagtgtgtccacaacctttctttccctatagtctttctttctttaatc |
523862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 281
Target Start/End: Complemental strand, 50465697 - 50465448
Alignment:
| Q |
38 |
catgatgcaacgttttaatgccttaaaaaatggcacaatgctaataat-------ataatcaaggctattttggactttt-ctcataaaattggtgcctt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| || ||||||| || |
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|
| T |
50465697 |
catgatgcaacgttttaatgccttaaaaaatgacacaatgctaataaataataacataatcaaggctattttggactttttctcaagaagttggtgcttt |
50465598 |
T |
|
| Q |
130 |
ttgcatgtttccgttcatagatgtgtggaaagattttgagcttgggtcccacctcaaaactttctttccacatcttttttatgtgttgtcaaagggtgga |
229 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||||||||||| |||| ||||| |||||||||||||| | ||||||||||||||| || |||||| |||| |
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|
| T |
50465597 |
ttacatgtttccgtccatggatgtgtggaaagattttgagcgtgggacccacatcaaaactttcttttctcatcttttttatgtgctgccaaaggatgga |
50465498 |
T |
|
| Q |
230 |
aaggtactatgtccagaacctttctttccctatagcctttctttctttaatc |
281 |
Q |
| |
|
|| ||||| | |||| ||||||| ||| |||||||||||||||||||| |
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|
| T |
50465497 |
aatgtactgtatccactcactttcttaccc--tagcctttctttctttaatc |
50465448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 55290800 - 55290905
Alignment:
| Q |
94 |
ggctattttggacttttc-tcataaaattggtgccttttgcatgtttccgttcatagatgtgtggaaagattttgagcttgggtcccacctcaaaacttt |
192 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| | |||||||| | ||| || ||| ||||| |||||||| ||||||||||||||||||||| |
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|
| T |
55290800 |
ggctattttggactttttgtcataaagttggtgccttctccatgtttctttccatggaggtgcagaaaggttttgagcgtgggtcccacctcaaaacttt |
55290899 |
T |
|
| Q |
193 |
ctttcc |
198 |
Q |
| |
|
|||||| |
|
|
| T |
55290900 |
ctttcc |
55290905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 198
Target Start/End: Original strand, 5788345 - 5788486
Alignment:
| Q |
62 |
aaaaaatggcacaatgctaataatata----atcaaggctattttggactttt-ctcataaaattggtgccttttgcatgtttccgttcatagatgtgtg |
156 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||| | |||||||||||||| ||||| | ||||||| ||||| |||||||| || | | || ||| |
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|
| T |
5788345 |
aaaaaatggcataatgcaaataatatattacatcaaagttattttggactttttctcatgatattggtgtctttttcatgtttctgtgcttggaggtgga |
5788444 |
T |
|
| Q |
157 |
gaaagattttgagcttgggtcccacctcaaaactttctttcc |
198 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||||||||| |
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|
| T |
5788445 |
gaaaggttttgagcgtgggtctcacctcaaaactttctttcc |
5788486 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 38722382 - 38722424
Alignment:
| Q |
156 |
ggaaagattttgagcttgggtcccacctcaaaactttctttcc |
198 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38722382 |
ggaaaggttttgagtgtgggtcccacctcaaaactttctttcc |
38722424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 82 - 281
Target Start/End: Original strand, 51193203 - 51193402
Alignment:
| Q |
82 |
taatataatcaaggctattttggacttttctcataaaattggtgccttttgcatgtttccgttcatagatgtgtggaaagattttgagcttgggtcccac |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||| |
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|
| T |
51193203 |
taatataatcaaggctattttggacttttctcatgaaattggtgccttttgcatgtttccgttcatggatgtgtggaaaggttttgagcgtgggtcccac |
51193302 |
T |
|
| Q |
182 |
ctcaaaactttctttccacatcttttttatgtgttgtcaaagggtggaaaggtactatgtccagaacctttctttccctatagcctttctttctttaatc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
51193303 |
ctcaaaactttctttccacatcttttttatgtgttgccaaagggtggaaaggaaccgtgtccacaacctttctttccctatagcctttctttctttaatc |
51193402 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 51192931 - 51193020
Alignment:
| Q |
1 |
tatgtgtcaaaatcataaattgcctagtatgctcgtacatgatgcaacgttttaatgccttaaaaaatggcacaatgctaataatataat |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51192931 |
tatgtgtcaaaatcataaattgcctagtatgcttgtacatgatgcaacgttttaatgccttaaaaaatggcacaatgctaataatataat |
51193020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9239322 - 9239218
Alignment:
| Q |
1 |
tatgtgtcaaaatcataaattgcctagtatgctcgta-----catgatgcaacgttttaatgccttaaaaaatggcacaatgctaataatataatcaagg |
95 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||| | |||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
9239322 |
tatgtgttaaaatcatgaattgcttagtatgcttgtaaacggcatgatgcaacgttttattaccttaaaaaatgcaacaatgctagtaacataatcaagg |
9239223 |
T |
|
| Q |
96 |
ctatt |
100 |
Q |
| |
|
||||| |
|
|
| T |
9239222 |
ctatt |
9239218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 46121993 - 46122068
Alignment:
| Q |
156 |
ggaaagattttgagcttgggtcccacctcaaaactttctttccacatcttttttatgtgttgtcaaagggtggaaa |
231 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||||||| | ||||||| | |||||| ||||||||||||| |
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|
| T |
46121993 |
ggaaaggttttgagtgtgggtcccacctcaagactttctttcctcttctttttgaagtgttgccaaagggtggaaa |
46122068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 11700800 - 11700905
Alignment:
| Q |
94 |
ggctattttggacttttc-tcataaaattggtgccttttgcatgtttccgttcatagatgtgtggaaagattttgagcttgggtcccacctcaaaacttt |
192 |
Q |
| |
|
|||||||||| |||||| ||||||| |||||||||| | ||||||| || ||| || ||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
11700800 |
ggctattttgaactttttgtcataaagttggtgccttctccatgtttatgtccatggaggtgcataaaggttttgagcgtgggtcccacctcaaaacttt |
11700899 |
T |
|
| Q |
193 |
ctttcc |
198 |
Q |
| |
|
|||||| |
|
|
| T |
11700900 |
ctttcc |
11700905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 23624487 - 23624528
Alignment:
| Q |
156 |
ggaaagattttgagcttgggtcccacctcaaaactttctttcc |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23624487 |
ggaaagattttgagcatgggtcccacctc-aaactttctttcc |
23624528 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 198
Target Start/End: Complemental strand, 18484948 - 18484807
Alignment:
| Q |
62 |
aaaaaatggcacaatgctaataatata----atcaaggctattttggacttttc-tcataaaattggtgccttttgcatgtttccgttcatagatgtgtg |
156 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||||| |||| || |||||| |||| | ||||||||| |||||||| ||| |
|
|
| T |
18484948 |
aaaaaatggcacaatgttaataatatattatatcaaggctattttggactttttatcatgaagttggtgttttttccttgtttccgtgcatagatgagtg |
18484849 |
T |
|
| Q |
157 |
gaaagattttgagcttgggtcccacctcaaaactttctttcc |
198 |
Q |
| |
|
||||| |||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
18484848 |
gaaaggttttgagcgtgggttccatctcaaaactttctttcc |
18484807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 23954623 - 23954682
Alignment:
| Q |
172 |
tgggtcccacctcaaaactttctttccacatcttttttatgtgttgtcaaagggtggaaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |
|
|
| T |
23954623 |
tgggtcccacctcaaaactttctttccacatctttttgaagtgttgccaaagggtggaaa |
23954682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 12100889 - 12100814
Alignment:
| Q |
156 |
ggaaagattttgagcttgggtcccacctcaaaactttctttccacatcttttttatgtgttgtcaaagggtggaaa |
231 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||| | ||||||| | ||||| ||||||||||||| |
|
|
| T |
12100889 |
ggaaaggttttgagtgtgggtcccacctcaaaactttttttcctcttctttttgagttgttgccaaagggtggaaa |
12100814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 37207183 - 37207033
Alignment:
| Q |
52 |
ttaatgccttaaaaaatggcacaatgctaataatata----atcaaggctattttggacttttctcataaaattggtgccttttgcatgtttccgttcat |
147 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||| ||| |||| || ||||||| |||| | ||||| ||| | |
|
|
| T |
37207183 |
ttaatgcctaaaataatggcacaatgcaaataatatgttacatcaaggctattttggacatttttcatgaagttggtgcatttttcttgttttcgtcttt |
37207084 |
T |
|
| Q |
148 |
agatgtgtggaaagattttgagcttgggtcccacctcaaaactttctttcc |
198 |
Q |
| |
|
|| || |||||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
37207083 |
ggacctgcggaaagtttttgagcatggatcccacctcaaaactttctttcc |
37207033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 232
Target Start/End: Complemental strand, 28155051 - 28154877
Alignment:
| Q |
62 |
aaaaaatggcacaatgctaataatata----atcaaggctattttggacttttctcataaaattggtgccttttgcatgtttccgttcatagatgtgtgg |
157 |
Q |
| |
|
|||||||| |||||||| |||||| || |||||||||||||||| ||||| |||| || ||||||| |||| ||||||||| | | | | || | |
|
|
| T |
28155051 |
aaaaaatgacacaatgcaaataatgtatttcatcaaggctattttggtcttttttcatgaagttggtgcatttttcatgtttccatccttgaacctgcga |
28154952 |
T |
|
| Q |
158 |
aaagattttgagcttgggtcccacctcaaaactttctttccacatcttttttatgtgttgtcaaagggtggaaag |
232 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| | ||||||| | ||| || |||||||||||||| |
|
|
| T |
28154951 |
aaagtttttgaatgtgggtcccacctcaaaactttctttcttcttctttttaaagtgctgccaaagggtggaaag |
28154877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 9262 - 9365
Alignment:
| Q |
97 |
tattttggacttttct--cataaaattggtgccttttgcatgtttccgttcatagatgtgtggaaagattttgagcttgggtcccacctcaaaactttct |
194 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||| | |||||||| || ||| || ||| |||| |||||||| |||||| || ||||||||||||| |
|
|
| T |
9262 |
tattttggacttttttgtcataaagttggtgccttctccatgtttctgtccatggaggtgcaaaaaggttttgagcgtgggtcacatctcaaaactttct |
9361 |
T |
|
| Q |
195 |
ttcc |
198 |
Q |
| |
|
|||| |
|
|
| T |
9362 |
ttcc |
9365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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