View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20366_low_5 (Length: 216)

Name: NF20366_low_5
Description: NF20366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20366_low_5
NF20366_low_5
[»] chr6 (27 HSPs)
chr6 (1-199)||(10031517-10031715)
chr6 (51-105)||(19369814-19369868)
chr6 (59-105)||(6751890-6751936)
chr6 (54-105)||(5579654-5579705)
chr6 (39-101)||(1334646-1334708)
chr6 (59-96)||(29959180-29959217)
chr6 (41-105)||(4859121-4859185)
chr6 (41-100)||(34868170-34868229)
chr6 (57-107)||(16503678-16503728)
chr6 (5-95)||(17168845-17168935)
chr6 (59-105)||(22745962-22746008)
chr6 (35-117)||(34446546-34446628)
chr6 (68-105)||(10157998-10158035)
chr6 (55-100)||(31430281-31430326)
chr6 (54-105)||(785463-785515)
chr6 (57-105)||(16516944-16516992)
chr6 (54-96)||(7377979-7378021)
chr6 (68-98)||(9024191-9024221)
chr6 (5-43)||(9825030-9825068)
chr6 (47-105)||(32225398-32225456)
chr6 (61-98)||(5635903-5635940)
chr6 (68-105)||(7942269-7942306)
chr6 (51-100)||(8623202-8623251)
chr6 (56-100)||(3449888-3449932)
chr6 (5-49)||(12787745-12787789)
chr6 (118-150)||(20809719-20809751)
chr6 (60-105)||(26402688-26402735)
[»] chr8 (27 HSPs)
chr8 (54-123)||(26915230-26915299)
chr8 (55-123)||(27733848-27733916)
chr8 (54-105)||(42874522-42874573)
chr8 (64-105)||(31119097-31119138)
chr8 (34-105)||(24295145-24295216)
chr8 (54-105)||(34073986-34074037)
chr8 (5-96)||(1433296-1433387)
chr8 (54-105)||(10497824-10497875)
chr8 (18-98)||(22770929-22771006)
chr8 (60-97)||(6960692-6960729)
chr8 (55-104)||(22600530-22600579)
chr8 (45-105)||(11246087-11246147)
chr8 (5-118)||(44067461-44067580)
chr8 (61-96)||(1639497-1639532)
chr8 (54-105)||(31548301-31548352)
chr8 (49-107)||(24208712-24208769)
chr8 (68-98)||(29198494-29198524)
chr8 (66-95)||(1591311-1591340)
chr8 (60-105)||(2652345-2652389)
chr8 (49-105)||(3954388-3954444)
chr8 (68-96)||(10441217-10441245)
chr8 (54-98)||(12985392-12985436)
chr8 (52-96)||(14943114-14943158)
chr8 (52-95)||(25104613-25104654)
chr8 (68-96)||(34201063-34201091)
chr8 (51-99)||(34739075-34739123)
chr8 (54-98)||(40063951-40063995)
[»] scaffold0024 (1 HSPs)
scaffold0024 (23-107)||(18114-18198)
[»] chr4 (34 HSPs)
chr4 (53-107)||(44362665-44362719)
chr4 (60-107)||(13307883-13307930)
chr4 (51-105)||(37496701-37496755)
chr4 (52-123)||(34589698-34589767)
chr4 (54-105)||(13117429-13117480)
chr4 (52-95)||(28663490-28663533)
chr4 (42-98)||(5654606-5654662)
chr4 (63-150)||(10164817-10164904)
chr4 (54-98)||(18513256-18513300)
chr4 (54-118)||(20743273-20743337)
chr4 (41-98)||(10546135-10546192)
chr4 (60-101)||(10634996-10635037)
chr4 (61-105)||(13484030-13484075)
chr4 (36-96)||(11017799-11017859)
chr4 (54-98)||(14465309-14465353)
chr4 (65-105)||(22799901-22799941)
chr4 (47-106)||(31851901-31851963)
chr4 (68-111)||(683066-683109)
chr4 (80-123)||(20633508-20633551)
chr4 (49-99)||(4090097-4090147)
chr4 (58-119)||(20119949-20120011)
chr4 (54-96)||(49887756-49887798)
chr4 (68-105)||(9988707-9988744)
chr4 (74-115)||(27062914-27062955)
chr4 (60-96)||(5176990-5177026)
chr4 (54-98)||(7012066-7012110)
chr4 (68-100)||(8457939-8457971)
chr4 (64-100)||(9298943-9298979)
chr4 (68-96)||(26276026-26276054)
chr4 (67-111)||(35480167-35480211)
chr4 (5-45)||(40774226-40774266)
chr4 (54-98)||(43299986-43300030)
chr4 (54-98)||(43300616-43300660)
chr4 (40-96)||(44796979-44797035)
[»] chr7 (31 HSPs)
chr7 (4-105)||(44317294-44317395)
chr7 (55-105)||(5937429-5937479)
chr7 (54-105)||(1885573-1885624)
chr7 (47-98)||(38134421-38134472)
chr7 (52-106)||(35238191-35238245)
chr7 (61-105)||(2144547-2144591)
chr7 (64-111)||(2143855-2143902)
chr7 (60-107)||(48964068-48964115)
chr7 (55-105)||(22801749-22801799)
chr7 (68-120)||(23930233-23930285)
chr7 (68-123)||(7133268-7133323)
chr7 (68-106)||(44172897-44172935)
chr7 (57-105)||(13094721-13094769)
chr7 (73-105)||(25956464-25956496)
chr7 (56-107)||(31808515-31808566)
chr7 (9-96)||(42720907-42720994)
chr7 (54-107)||(16827639-16827693)
chr7 (60-110)||(28635173-28635223)
chr7 (52-90)||(31376998-31377036)
chr7 (61-107)||(36196787-36196833)
chr7 (61-98)||(6091334-6091371)
chr7 (60-105)||(9050141-9050186)
chr7 (60-105)||(10702552-10702596)
chr7 (66-99)||(18678160-18678193)
chr7 (52-93)||(23165408-23165449)
chr7 (68-105)||(37775996-37776033)
chr7 (60-105)||(37820086-37820131)
chr7 (54-98)||(2525859-2525903)
chr7 (41-105)||(21880139-21880203)
chr7 (68-100)||(35917393-35917425)
chr7 (54-118)||(43249993-43250057)
[»] chr5 (27 HSPs)
chr5 (49-103)||(30080511-30080565)
chr5 (5-123)||(26205750-26205874)
chr5 (39-105)||(19167584-19167651)
chr5 (52-105)||(21319953-21320006)
chr5 (5-98)||(11596470-11596562)
chr5 (56-105)||(38784808-38784857)
chr5 (53-101)||(9031937-9031985)
chr5 (63-107)||(16207597-16207641)
chr5 (61-100)||(42192283-42192322)
chr5 (54-107)||(28296328-28296381)
chr5 (68-117)||(31264452-31264501)
chr5 (47-96)||(38749580-38749629)
chr5 (54-86)||(309158-309190)
chr5 (61-105)||(10010561-10010605)
chr5 (70-105)||(10009842-10009877)
chr5 (72-123)||(10358121-10358172)
chr5 (53-104)||(15294930-15294981)
chr5 (68-119)||(25863218-25863269)
chr5 (55-98)||(43208289-43208332)
chr5 (54-111)||(15302525-15302580)
chr5 (53-98)||(4344741-4344786)
chr5 (54-98)||(2039864-2039908)
chr5 (54-98)||(2577195-2577239)
chr5 (55-91)||(18106654-18106690)
chr5 (68-116)||(18607094-18607142)
chr5 (47-107)||(36611452-36611512)
chr5 (68-96)||(41558671-41558699)
[»] chr2 (26 HSPs)
chr2 (55-105)||(43586013-43586063)
chr2 (58-105)||(13501086-13501133)
chr2 (54-105)||(18512150-18512201)
chr2 (64-107)||(24067263-24067306)
chr2 (63-105)||(14450803-14450845)
chr2 (54-110)||(10535762-10535818)
chr2 (55-98)||(18570973-18571016)
chr2 (54-96)||(40681982-40682024)
chr2 (52-98)||(45000861-45000906)
chr2 (54-99)||(26787812-26787857)
chr2 (59-103)||(11439800-11439844)
chr2 (57-105)||(33884054-33884102)
chr2 (61-105)||(37211893-37211937)
chr2 (59-107)||(42665613-42665661)
chr2 (62-105)||(24067758-24067801)
chr2 (54-117)||(30563409-30563472)
chr2 (54-105)||(44984658-44984709)
chr2 (55-105)||(14373435-14373485)
chr2 (55-105)||(16630796-16630846)
chr2 (52-90)||(39399910-39399948)
chr2 (5-119)||(11307998-11308117)
chr2 (57-98)||(31026698-31026739)
chr2 (55-91)||(2356380-2356416)
chr2 (68-104)||(6180874-6180910)
chr2 (47-119)||(23354646-23354718)
chr2 (60-96)||(37491872-37491908)
[»] chr3 (26 HSPs)
chr3 (54-105)||(49179723-49179774)
chr3 (47-141)||(15864238-15864338)
chr3 (17-107)||(13005388-13005479)
chr3 (59-101)||(14338495-14338537)
chr3 (39-105)||(28590858-28590924)
chr3 (55-123)||(12704647-12704715)
chr3 (9-120)||(27903582-27903698)
chr3 (54-123)||(25074789-25074858)
chr3 (55-100)||(34409355-34409400)
chr3 (59-100)||(52558141-52558182)
chr3 (54-102)||(6984764-6984812)
chr3 (5-84)||(3180793-3180872)
chr3 (54-105)||(9210833-9210884)
chr3 (72-123)||(25892478-25892529)
chr3 (40-123)||(34307770-34307853)
chr3 (60-103)||(42076759-42076802)
chr3 (68-119)||(52369789-52369840)
chr3 (35-105)||(19323456-19323526)
chr3 (51-96)||(13799501-13799546)
chr3 (68-125)||(19730198-19730254)
chr3 (68-125)||(19750788-19750844)
chr3 (68-105)||(44427855-44427892)
chr3 (60-96)||(24399660-24399696)
chr3 (55-123)||(25652021-25652089)
chr3 (52-100)||(34909866-34909914)
chr3 (68-96)||(40017386-40017414)
[»] scaffold0504 (1 HSPs)
scaffold0504 (47-105)||(8705-8763)
[»] scaffold0314 (1 HSPs)
scaffold0314 (59-105)||(8953-8999)
[»] chr1 (28 HSPs)
chr1 (40-100)||(14332395-14332454)
chr1 (55-124)||(24176820-24176890)
chr1 (55-105)||(40176604-40176654)
chr1 (35-105)||(40686766-40686836)
chr1 (64-105)||(18946042-18946083)
chr1 (54-103)||(24462280-24462329)
chr1 (54-123)||(42004937-42005006)
chr1 (54-105)||(28170382-28170432)
chr1 (46-113)||(29415740-29415807)
chr1 (64-107)||(43966816-43966859)
chr1 (51-98)||(50233398-50233445)
chr1 (68-98)||(3921681-3921711)
chr1 (68-106)||(8203835-8203873)
chr1 (47-97)||(40317832-40317882)
chr1 (54-96)||(40747790-40747832)
chr1 (70-123)||(6936390-6936443)
chr1 (54-107)||(7988457-7988510)
chr1 (68-97)||(11571599-11571628)
chr1 (49-98)||(33202898-33202947)
chr1 (5-105)||(38078669-38078770)
chr1 (54-98)||(11412783-11412827)
chr1 (54-98)||(19637768-19637812)
chr1 (57-89)||(22316390-22316422)
chr1 (52-96)||(29230063-29230107)
chr1 (61-105)||(34184675-34184719)
chr1 (51-95)||(39410639-39410683)
chr1 (55-95)||(42325561-42325601)
chr1 (5-45)||(47989443-47989483)
[»] scaffold0011 (1 HSPs)
scaffold0011 (20-98)||(240036-240114)
[»] scaffold0022 (1 HSPs)
scaffold0022 (47-96)||(99886-99935)
[»] scaffold0571 (1 HSPs)
scaffold0571 (68-100)||(7704-7736)
[»] scaffold0007 (1 HSPs)
scaffold0007 (54-110)||(225271-225327)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 10031517 - 10031715
Alignment:
Q  1 cgcttatgaagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031517 cgcttatgaagcacggacacagacacggataccagacatgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 10031616  T
Q  101 agtgttgtgtcagtgtcggacacacgttcaatcagaagtgttggtgcaactgaccatttatcatataaagtgcttactgcttacatataagttatttct 199  Q
    |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  10031617 agtgttgtgtcagtgtcgaacacacgttcaatcagcagtgtcggtgcaactgaccatttatcatataaagtgcttagtgcttacgtataagttatttct 10031715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 19369814 - 19369868
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19369814 gttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 19369868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 6751936 - 6751890
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 6751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 5579654 - 5579705
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 1334646 - 1334708
Alignment:
Q  39 tgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaa 101  Q
    ||||||| |||  ||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  1334646 tgacacagacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaa 1334708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 29959180 - 29959217
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 4859185 - 4859121
Alignment:
Q  41 acacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| ||||||| |||||| |||| | ||||||||||||||||||| ||||||||||||| ||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaatcacacgtgt 4859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 34868229 - 34868170
Alignment:
Q  41 acacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||| |||| || ||||||||||||||||||||| |||  ||||||||||||||||||||    
T  34868229 acactaacacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcaca 34868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 16503678 - 16503728
Alignment:
Q  57 accgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    |||||||||||||||||||||  | |||||||||||||||||| |||||||    
T  16503678 accgataaaattttgagaaaactatataattcaatgtaatcactagtgttg 16503728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 17168845 - 17168935
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaa 95  Q
    |||||||||| ||  |||||||||| |||  ||| |||||||||| || ||||  ||||| | ||||| ||||||||||||||||||||||    
T  17168845 tatgaagcacagattcagacacggacaccgaacacgacacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgtaa 17168935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 22745962 - 22746008
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||||    
T  22745962 cgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgt 22746008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 34446546 - 34446628
Alignment:
Q  35 gacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtc 117  Q
    ||||||||||| |||   |||||| ||||| | |||||||||||||||||||||| |||||||| | |||| ||||| |||||    
T  34446546 gacatgacacagacactctgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtc 34446628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 10157998 - 10158035
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgt 10158035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 31430281 - 31430326
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  31430281 acaccaataaaattttgagaaaatgacatgattaaatgtaatcaca 31430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 785515 - 785463
Alignment:
Q  54 gacaccgataaaattttgagaa-aatgacataattcaatgtaatcacaagtgt 105  Q
    ||||| ||||||||||| | || ||||||||||||||||||||||||||||||    
T  785515 gacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgt 785463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 16516944 - 16516992
Alignment:
Q  57 accgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||  | |||||||||||||||||| |||||    
T  16516944 accgataaaattttgagaaaactatataattcaatgtaatcactagtgt 16516992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 7377979 - 7378021
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||    
T  7377979 gacaccgctaaaaatttgagaaaatcacataattcaatgtaat 7378021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 9024221 - 9024191
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||||||||||||||||||    
T  9024221 tttgagaaaatgacataattcaatgtaatca 9024191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 9825030 - 9825068
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgaca 43  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  9825030 tatgaagcaaggacacagacacggataccagacacgaca 9825068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 32225456 - 32225398
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||  ||||||||||||||||||||| || | | |||||||||||||| ||||    
T  32225456 acatgttgaagccgataaaattttgagaaaataacgtgagtcaatgtaatcacaggtgt 32225398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 5635940 - 5635903
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  5635940 ataaaattttaagaaaatgacataattcaatataatca 5635903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 7942269 - 7942306
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  7942269 tttgagacaatgacataattcaatgtaatcacatgtgt 7942306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 8623202 - 8623251
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||||||||||||| | ||| |||||||||||| ||| ||||||||||||    
T  8623202 gttgacaccgataacaattttagaaaatgacatcattgaatgtaatcaca 8623251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 3449932 - 3449888
Alignment:
Q  56 caccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||||||||||||| ||  ||||||||||||||||| |||||||    
T  3449932 caccgataaaattttaagccaatgacataattcaatgcaatcaca 3449888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 12787745 - 12787789
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacacaaaca 49  Q
    ||||||||| ||||||| ||||||||||| |||| ||||||||||    
T  12787745 tatgaagcatggacacaaacacggataccggacacgacacaaaca 12787789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 20809719 - 20809751
Alignment:
Q  118 ggacacacgttcaatcagaagtgttggtgcaac 150  Q
    |||||||| ||||||||||||||||||||||||    
T  20809719 ggacacactttcaatcagaagtgttggtgcaac 20809751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 26402735 - 26402688
Alignment:
Q  60 gataaaattttgagaaaa--tgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||| ||||  |||||||||||| |||||||||||||||    
T  26402735 gataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgt 26402688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 26915299 - 26915230
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  26915299 gacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac 26915230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 27733848 - 27733916
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtt-gtgtcagtgtcggacac 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgtca-tgtcggacac 27733916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 42874522 - 42874573
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42874522 gacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgt 42874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 31119097 - 31119138
Alignment:
Q  64 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 24295216 - 24295145
Alignment:
Q  34 agacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||| |||||  |||||| |||| |||||||||| ||||||||||||| |||| |||||||||||||||||    
T  24295216 agacacgacactgacatgtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgt 24295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 34074037 - 34073986
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  34074037 gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgt 34073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 1433296 - 1433387
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||||| | | |||||||  |||| ||  ||||||||||||||||||||  |||  | ||||||||||||||||||| |||||||||    
T  1433296 tatgaagcacgaatatagacacgtctaccggatgtgacacaaacatgttgacactaatagtaatttgagaaaatgacataatccaatgtaat 1433387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 10497875 - 10497824
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||||||||||||    
T  10497875 gacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgt 10497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 22770929 - 22771006
Alignment:
Q  18 cacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||| ||||||| ||||||||||||||||||| |   |||||||||| | ||||| ||||  |||||||||||||||||||    
T  22770929 cacatacacggacaccagacatgacacaaacaag---acaccgataataatttgataaaacaacataattcaatgtaatca 22771006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 6960729 - 6960692
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatc 97  Q
    |||||||||||||||||||||||||||| |||||||||    
T  6960729 gataaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 22600530 - 22600579
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtg 104  Q
    ||||| |||||||||  |||||||||||||||||||| ||||||||||||    
T  22600530 acaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 11246147 - 11246087
Alignment:
Q  45 aaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||| |||| || |||||||||||||||||||| ||||||| |||||||||  |||||||    
T  11246147 aaacacgttggcatcgataaaattttgagaaaataacataatgcaatgtaatttcaagtgt 11246087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 44067461 - 44067580
Alignment:
Q  5 tatgaagcacggacacagacacggataccagaca------tgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||||||||||||||||| ||||||||       |||||  ||| |  ||||| ||||| | ||||||||||||||||||| || |||||| |    
T  44067461 tatgaagcacggacacagacacggacaccagacaccacaccgacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaatta 44067560  T
Q  99 caagtgttgtgtcagtgtcg 118  Q
     |||||| ||||| ||||||    
T  44067561 taagtgtcgtgtcggtgtcg 44067580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 1639497 - 1639532
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||| |||||||||||||||||||||||||||||||    
T  1639497 ataatattttgagaaaatgacataattcaatgtaat 1639532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 31548352 - 31548301
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||   ||||| ||||||||||||||||||||||||||| ||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgt 31548301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 24208769 - 24208712
Alignment:
Q  49 atgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||||  |||||||||| ||||||||||||| ||||||| |||||| |||||||    
T  24208769 atgttgacactaataaaattttaagaaaatgacatatttcaatg-aatcactagtgttg 24208712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 29198524 - 29198494
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||||||||||||||||||    
T  29198524 tttgagaaaatgacataattcaatgtaatca 29198494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 1591311 - 1591340
Alignment:
Q  66 attttgagaaaatgacataattcaatgtaa 95  Q
    ||||||||||||||||||||||||||||||    
T  1591311 attttgagaaaatgacataattcaatgtaa 1591340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 2652345 - 2652389
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  2652345 gataaattttttagaaaatgacataatt-aatgtaatcacaagtgt 2652389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 3954444 - 3954388
Alignment:
Q  49 atgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| ||||||  |||||||||||||||||||| || |||||| |||||||| ||||    
T  3954444 atgtcgacacctgtaaaattttgagaaaatgacgtatttcaatttaatcacatgtgt 3954388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Original strand, 10441217 - 10441245
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaat 96  Q
    |||||||||||||||||||||||||||||    
T  10441217 tttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 12985392 - 12985436
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||| |||| | ||||||||||| |||||||||||||||||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatca 12985436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 14943158 - 14943114
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||||||| ||||||||||||||||||||| | ||||| ||||||    
T  14943158 ttgacaccaataaaattttgagaaaatgacttgattcagtgtaat 14943114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 25104654 - 25104613
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaa 95  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||    
T  25104654 ttgacaccgataaaattttgacaaaatgac--aattcaatgtaa 25104613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 34201091 - 34201063
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaat 96  Q
    |||||||||||||||||||||||||||||    
T  34201091 tttgagaaaatgacataattcaatgtaat 34201063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 34739123 - 34739075
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaatcac 99  Q
    ||||||| |||||| | | ||||||||||||||||||||||||| ||||    
T  34739123 gttgacatcgataataatatgagaaaatgacataattcaatgtagtcac 34739075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 40063951 - 40063995
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||| |||| | |||||||||||||||||||||| ||||||||    
T  40063951 gacaccaataataatttgagaaaatgacataattcattgtaatca 40063995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 18198 - 18114
Alignment:
Q  23 acacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||| |||||||| |||||  ||| || ||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  18198 acacggacaccagacacgacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttg 18114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 44362665 - 44362719
Alignment:
Q  53 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttg 44362719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 13307883 - 13307930
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 13307930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 37496701 - 37496755
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  37496701 gttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgt 37496755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 34589767 - 34589698
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||||||||||| | |||||||||||||||||||||||||||||  || |||| |||||||||||||||||    
T  34589767 ttgacaccgataacaatttgagaaaatgacataattcaatgtaat--catgtgtcgtgtcagtgtcggacac 34589698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 13117429 - 13117480
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||||||    
T  13117429 gacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgt 13117480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 28663490 - 28663533
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaa 95  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  28663490 ttgacacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 5654662 - 5654606
Alignment:
Q  42 cacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||| |||||| ||||| ||||| | |||||||||||||||||||||||||||||||    
T  5654662 cacagacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 10164904 - 10164817
Alignment:
Q  63 aaaattttgagaaaatgacataattcaatgtaatcacaagtgt-tgtgtcagtgtcggacacacgttcaatcagaagtgttggtgcaac 150  Q
    ||||| |||| ||||||||||||||||||||||||||||||||  || | |||||||||||| | |||| | |||||||||| ||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgtcagtat-agtgtcggacacgccttcagttagaagtgttgatgcaac 10164817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 18513300 - 18513256
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 20743337 - 20743273
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcg 118  Q
    ||||| ||||| | |||||||||||||||||||||| |||||||| | |||||||||| ||||||    
T  20743337 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcg 20743273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 10546135 - 10546192
Alignment:
Q  41 acacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||| |||||| ||||  ||||| | |||||||||||||||||||||||||||||||    
T  10546135 acacagacatgtcgacaatgataataatttgagaaaatgacataattcaatgtaatca 10546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 10634996 - 10635037
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaa 101  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  10634996 gataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 13484030 - 13484075
Alignment:
Q  61 ataaaattttgagaaaatgacataattc-aatgtaatcacaagtgt 105  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtgt 13484075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 11017859 - 11017799
Alignment:
Q  36 acatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||| |||| ||||||||| |||||||||| ||||||| |  ||||||||||||||    
T  11017859 acatgacacgaacacgttgacaccaataaaattttaagaaaataatctaattcaatgtaat 11017799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 14465353 - 14465309
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatca 14465309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 22799941 - 22799901
Alignment:
Q  65 aattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  22799941 aatttttagaaaatgacataattcaatgtaatcacacgtgt 22799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 31851963 - 31851901
Alignment:
Q  47 acatgttgacaccgataaaattttg---agaaaatgacataattcaatgtaatcacaagtgtt 106  Q
    ||||| |||||||||||||||||||   |||||||  |||||||||||||||||||| |||||    
T  31851963 acatgctgacaccgataaaattttgagaagaaaatagcataattcaatgtaatcacatgtgtt 31851901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 683066 - 683109
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtc 111  Q
    |||||||||||||||||||| |||||||||||| |||| |||||    
T  683066 tttgagaaaatgacataattgaatgtaatcacatgtgtcgtgtc 683109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 20633508 - 20633551
Alignment:
Q  80 acataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||    
T  20633508 acataattcaatgtaattacaagtgtcgtgtcggtgtcggacac 20633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 4090147 - 4090097
Alignment:
Q  49 atgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcac 99  Q
    |||||||| ||| |||||||||||||||||||||||| |||| | ||||||    
T  4090147 atgttgaccccggtaaaattttgagaaaatgacataactcaaagcaatcac 4090097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 20119949 - 20120011
Alignment:
Q  58 ccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtt-gtgtcagtgtcgg 119  Q
    ||||||| | ||||||||||||| |||||| |||||||||||| ||||| ||||| |||||||    
T  20119949 ccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgtctgtgtcgg 20120011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 49887756 - 49887798
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||| ||||||||||||||  ||||||||||||||||||||||    
T  49887756 gacatcgataaaattttgaagaaatgacataattcaatgtaat 49887798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 9988744 - 9988707
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  9988744 tttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 27062955 - 27062914
Alignment:
Q  74 aaaatgacataattcaatgtaatcacaagtgttgtgtcagtg 115  Q
    ||||| ||||||||||||||||||| | ||||||||||||||    
T  27062955 aaaataacataattcaatgtaatcaaacgtgttgtgtcagtg 27062914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 5176990 - 5177026
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  5176990 gataatattttgagaaaataacataattcaatgtaat 5177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 7012066 - 7012110
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | |||||||||||||||||||||| ||| ||||    
T  7012066 gacaccgataataatttgagaaaatgacataattcagtgtgatca 7012110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 8457939 - 8457971
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||||||||||||||||||| ||||||||||||    
T  8457939 tttgagaaaatgacataattgaatgtaatcaca 8457971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 9298943 - 9298979
Alignment:
Q  64 aaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  9298943 aaattttaagaaaatgacataattcaatgtcatcaca 9298979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 26276054 - 26276026
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaat 96  Q
    |||||||||||||||||||||||||||||    
T  26276054 tttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 35480167 - 35480211
Alignment:
Q  67 ttttgagaaaatgacataattcaatgtaatcacaagtgttgtgtc 111  Q
    |||| ||||||||||||||||||||||| ||| | ||||||||||    
T  35480167 tttttagaaaatgacataattcaatgtattcagatgtgttgtgtc 35480211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40774226 - 40774266
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacaca 45  Q
    |||||| |||||| |||||||||||||||||||| ||||||    
T  40774226 tatgaaacacggatacagacacggataccagacacgacaca 40774266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 43300030 - 43299986
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||| ||||| | ||||||||||| |||||||||||||||||||    
T  43300030 gacacggataataatttgagaaaattacataattcaatgtaatca 43299986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 43300616 - 43300660
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||| ||||| | ||||||||||| |||||||||||||||||||    
T  43300616 gacacggataataatttgagaaaattacataattcaatgtaatca 43300660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 44797035 - 44796979
Alignment:
Q  40 gacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||||| ||||||  ||||||| || | ||||||||||| |||||||||||||||||    
T  44797035 gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaat 44796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 44317395 - 44317294
Alignment:
Q  4 ttatgaagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    |||||||||||||| ||| ||| ||| ||| |||| ||| | |||| |||||||| ||||||||||| | ||||||||||||||||||||||||| ||||    
T  44317395 ttatgaagcacggatacaaacatggacacctgacacgaccctaacacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagt 44317296  T
Q  104 gt 105  Q
    ||    
T  44317295 gt 44317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 5937479 - 5937429
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 5937429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 1885573 - 1885624
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  1885573 gacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgt 1885624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 38134472 - 38134421
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  38134472 acatgttgacaccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 35238245 - 35238191
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtt 106  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| |||||    
T  35238245 ttgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgtt 35238191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 2144591 - 2144547
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgt 2144547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 2143902 - 2143855
Alignment:
Q  64 aaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtc 111  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtgatgtgtc 2143855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 48964115 - 48964068
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtgttg 48964068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 22801799 - 22801749
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  22801799 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgt 22801749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 23930233 - 23930285
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcgga 120  Q
    |||||||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  23930233 tttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgga 23930285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 7133323 - 7133268
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    |||||||||||||||||||||| |||||||| | ||| |||||| |||||||||||    
T  7133323 tttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacac 7133268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 44172935 - 44172897
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgtt 106  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  44172935 tttgagaaaatgacataattcaatgtaatcacatgtgtt 44172897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 13094769 - 13094721
Alignment:
Q  57 accgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||  | |||||||||||||||||| |||||    
T  13094769 accgataaaattttgagaaaactatataattcaatgtaatcactagtgt 13094721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 25956464 - 25956496
Alignment:
Q  73 gaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||||||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgt 25956496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 31808566 - 31808515
Alignment:
Q  56 caccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||| | ||||||||||||||| || |||||||||||||| ||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttg 31808515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 42720994 - 42720907
Alignment:
Q  9 aagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||| || ||||| || | ||||||||||||  ||| |||||||||| ||| | ||||| ||||| |||||||| ||||||||    
T  42720994 aagcacggatacggacacagacatcagacatgacactgacacgttgacaccgctaataatttgaaaaaatcacataattaaatgtaat 42720907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 16827639 - 16827693
Alignment:
Q  54 gacaccgataaa-attttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    |||||||||||| | |||||| ||||||||| |||||||||||||||| ||||||    
T  16827639 gacaccgataaataatttgagcaaatgacatgattcaatgtaatcacatgtgttg 16827693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 28635223 - 28635173
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgt 110  Q
    |||||||||||||||||||  || ||||||| ||||||||| |||||||||    
T  28635223 gataaaattttgagaaaatttcacaattcaacgtaatcacatgtgttgtgt 28635173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 31376998 - 31377036
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaa 90  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  31376998 ttgacatcaataaaattttgagaaaatgacataattcaa 31377036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 36196787 - 36196833
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    |||||||||||||||||  |||||||||||  |||||||||||||||    
T  36196787 ataaaattttgagaaaacaacataattcaacataatcacaagtgttg 36196833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 6091334 - 6091371
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  6091334 ataaaattttgagaaaatgatataattcaatataatca 6091371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 9050186 - 9050141
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||| ||||||||||| |||||| |||||||| ||||    
T  9050186 gataaaattttgaaaaaatgacatagttcaatataatcacatgtgt 9050141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 10702596 - 10702552
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||    
T  10702596 gataaaattttgagaaaatgacat-attcaatgtaattataagtgt 10702552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 18678160 - 18678193
Alignment:
Q  66 attttgagaaaatgacataattcaatgtaatcac 99  Q
    |||||||||||||||||||||||||| |||||||    
T  18678160 attttgagaaaatgacataattcaatataatcac 18678193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 23165449 - 23165408
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgt 93  Q
    |||| |||||||| |||||||||||||||||| |||||||||    
T  23165449 ttgaaaccgataatattttgagaaaatgacatgattcaatgt 23165408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 37775996 - 37776033
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  37775996 tttgagaaaatgacataattaaatgtaatcacatgtgt 37776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 37820086 - 37820131
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||| ||||| |||||||| ||||||||| |||||||    
T  37820086 gataaaattttgaaaaaataacataatttaatgtaatcgcaagtgt 37820131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 2525903 - 2525859
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | |||||| ||||||||||||||||| ||||||    
T  2525903 gacaccgataataatttgagcaaatgacataattcaatataatca 2525859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 21880139 - 21880203
Alignment:
Q  41 acacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| ||||||| |||| || ||| | ||||||||||| |||||||||| |||||| ||||||||    
T  21880139 acactaacatgtggacatcgctaataatttgagaaaattacataattcagtgtaattacaagtgt 21880203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 35917425 - 35917393
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||||||||||| |||||||||||||||||||    
T  35917425 tttgagaaaatgatataattcaatgtaatcaca 35917393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 43249993 - 43250057
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcg 118  Q
    ||||| ||||| | ||||||||||||||||||| || |||||| | |||||| ||||| ||||||    
T  43249993 gacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcg 43250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 30080565 - 30080511
Alignment:
Q  49 atgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30080565 atgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 26205874 - 26205750
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgaca------caaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||| ||||||||||||||| ||| |||||||||      |  ||| || || ||||||||||||||||||||||||||||||||| ||||||||    
T  26205874 tatgaagcatggacacagacacggacaccggacatgacatggacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T
Q  99 caagtgttgtgtcagtgtcggacac 123  Q
     | |||| ||||  |||||||||||    
T  26205774 taggtgtcgtgttggtgtcggacac 26205750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 19167651 - 19167584
Alignment:
Q  39 tgacacaaacatgttgacaccgataaaattttgagaaaa-tgacataattcaatgtaatcacaagtgt 105  Q
    ||||||| ||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  19167651 tgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgt 19167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 21320006 - 21319953
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21320006 ttgacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 11596562 - 11596470
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||| ||| |||||| | | ||||||||   |||||||| || || |||||||| | |||||||||||||||||||||||||||||||    
T  11596562 tatgaagcacagactcagacatg-acaccagacacagcacaaacacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 38784808 - 38784857
Alignment:
Q  56 caccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  38784808 caccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgt 38784857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 9031985 - 9031937
Alignment:
Q  53 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaa 101  Q
    ||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  9031985 tgacaccgataaatttttgaggaaatgacataattcaatctaatcacaa 9031937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 16207641 - 16207597
Alignment:
Q  63 aaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgttg 16207597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 42192283 - 42192322
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 28296328 - 28296381
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||| | ||||||    
T  28296328 gacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttg 28296381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 31264452 - 31264501
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtc 117  Q
    |||||||||||||||||||||| |||||||| |||||| |||||| ||||    
T  31264452 tttgagaaaatgacataattcagtgtaatcataagtgtcgtgtcaatgtc 31264501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 38749629 - 38749580
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||||| ||||||||||| | ||||| |||||||||||||||||||||||    
T  38749629 acatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 309158 - 309190
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataat 86  Q
    |||||||||||||||||||||||||||||||||    
T  309158 gacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 10010561 - 10010605
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||| |||||||||||||||| |||||||||| ||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgt 10010605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 10009842 - 10009877
Alignment:
Q  70 tgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||||||||||| ||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgtgt 10009877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 10358121 - 10358172
Alignment:
Q  72 agaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    |||||||||||||| | |||||||||| | |||||||||||||||| |||||    
T  10358121 agaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtcagacac 10358172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 15294930 - 15294981
Alignment:
Q  53 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtg 104  Q
    |||| ||||| | ||||||| ||||||||||||||||| |||||||||||||    
T  15294930 tgacgccgatgatattttgaaaaaatgacataattcaaggtaatcacaagtg 15294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 25863218 - 25863269
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcgg 119  Q
    ||||||||||||| |||||||| |||||| | |||||| |||||||||||||    
T  25863218 tttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgg 25863269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 43208332 - 43208289
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||  | |||||||||||||||||||||||||||||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 15302525 - 15302580
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtc 111  Q
    |||| |||||||||||||| ||||||||  ||||||| |||||||||||||| |||||    
T  15302525 gacaacgataaaattttgaaaaaatgac--aattcaaggtaatcacaagtgtcgtgtc 15302580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 4344741 - 4344786
Alignment:
Q  53 tgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||| | ||||| |||||||||||||||| ||||||||    
T  4344741 tgacaccgataataatttgaaaaaatgacataattcagtgtaatca 4344786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 2039908 - 2039864
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||| ||| | |||||||||||||||| ||||||||||||||    
T  2039908 gacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 2577239 - 2577195
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | |||||||||||||||||||| | ||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatca 2577195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 18106690 - 18106654
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaat 91  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  18106690 acaccgataaaattttgaaaaaatgatataattcaat 18106654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 18607142 - 18607094
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgt 116  Q
    ||||||||||| ||||||||||||||||||| | |||| ||||| ||||    
T  18607142 tttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgt 18607094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 36611452 - 36611512
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    |||||||||||||||||  | ||| |||||||||||||||| || ||||| ||| ||||||    
T  36611452 acatgttgacaccgatagtagtttaagaaaatgacataattgaacgtaatgacatgtgttg 36611512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 41558699 - 41558671
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaat 96  Q
    |||||||||||||||||||||||||||||    
T  41558699 tttgagaaaatgacataattcaatgtaat 41558671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 43586063 - 43586013
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 43586013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 13501133 - 13501086
Alignment:
Q  58 ccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13501133 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 18512201 - 18512150
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgt 18512150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 24067263 - 24067306
Alignment:
Q  64 aaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgttg 24067306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 14450845 - 14450803
Alignment:
Q  63 aaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 10535818 - 10535762
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgt 110  Q
    ||||||||||| | |||||||||||||||||||||| |||||||| |||||| ||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 18570973 - 18571016
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||| | |||||||||||||||||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 40681982 - 40682024
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||||| | |||||||||||||||||||||||||||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 45000906 - 45000861
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||    
T  45000906 ttgacaccgataaaattt-gagaaaatgacacaattcaatgtaatca 45000861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 26787857 - 26787812
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcac 99  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||||    
T  26787857 gacaccaataaaaatttgagaaaatgacataattcgatgtaatcac 26787812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 11439800 - 11439844
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||    
T  11439800 cgataaaattatgagaaaataacataattcagtgtaatcacaagt 11439844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 33884054 - 33884102
Alignment:
Q  57 accgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||| |||||||||||||| ||||| |||||| ||||||||    
T  33884054 accgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgt 33884102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 37211937 - 37211893
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  37211937 ataaaatttcgagaaaatgacacaattcaatgtaattacaagtgt 37211893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 42665613 - 42665661
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    |||||||||||||| || ||||||| |||||||||||||||| ||||||    
T  42665613 cgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgttg 42665661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 24067758 - 24067801
Alignment:
Q  62 taaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||    
T  24067758 taaaattttgagaaaatgtcataattaaatgaaatcacaagtgt 24067801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 30563409 - 30563472
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtc 117  Q
    ||||| ||||| | ||||||||||||||||||||||||||||  | | |||||||||| |||||    
T  30563409 gacacggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtc 30563472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 44984709 - 44984658
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||| || ||||||||| ||||||| |||||||||||| |||||||||||    
T  44984709 gacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgt 44984658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 14373485 - 14373435
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||| ||||||||||||   ||||||||||||||||||||||||| ||||    
T  14373485 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgt 14373435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 16630796 - 16630846
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||| | ||| |||||||||||||||||||| |||||||| ||||    
T  16630796 acaccgataataatttaagaaaatgacataattcaatttaatcacatgtgt 16630846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 39399910 - 39399948
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaa 90  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  39399910 ttgacaccgatgaaatttttagaaaatgacataattcaa 39399948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 11308117 - 11307998
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacacaaac------atgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||      ||   ||||| |||| || ||||| |||||||||||||||| ||||||||    
T  11308117 tatgaagcacggacacagacacggacaccggacatggcacgaacaccgatataccgacacggatataa-tttgaaaaaatgacataattcagtgtaatca 11308019  T
Q  99 caagtgttgtgtcagtgtcgg 119  Q
     | |||| ||||| |||||||    
T  11308018 taggtgtcgtgtcggtgtcgg 11307998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 31026698 - 31026739
Alignment:
Q  57 accgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||| | ||| |||||||||||||||||||||||||||    
T  31026698 accgataataatttaagaaaatgacataattcaatgtaatca 31026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 2356416 - 2356380
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaat 91  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  2356416 acactgatcaaattttgagaaaatgacataattcaat 2356380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 6180910 - 6180874
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtg 104  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6180910 tttgagaaaatgacatgattcaatgtaatcataagtg 6180874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 23354718 - 23354646
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcgg 119  Q
    ||||| |||||| ||||| | ||||||||||||| |||||| | |||||||| | |||| ||||| |||||||    
T  23354718 acatgctgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcgg 23354646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 37491908 - 37491872
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||||||||||||| || ||||||||||||||    
T  37491908 gataaaattttgagaaaataacttaattcaatgtaat 37491872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 49179774 - 49179723
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgt 49179723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 15864238 - 15864338
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtt------gtgtcagtgtcggacacacgttcaatcagaagtg 140  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| ||||||  ||||||      |||||  |||||||||||| |||||| |||||||    
T  15864238 acatgttgacacggataaagttttgagaaaatgacataattcaatataatcattagtgttggtgtcgtgtcgctgtcggacacaccttcaattagaagtg 15864337  T
Q  141 t 141  Q
    |    
T  15864338 t 15864338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 13005388 - 13005479
Alignment:
Q  17 acacagacacggataccagacatgacacaaacatgttgacaccgataaaattttg-agaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||||| | | | || ||||||| |||||||| |||||||| |||||||  | |||||||||||||||||| |||||||||||||||    
T  13005388 acacagacacgaacatcggatatgacacgaacatgtttacaccgatcaaattttttaaaaaatgacataattcaatataatcacaagtgttg 13005479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 14338537 - 14338495
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcacaa 101  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaa 14338495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 28590858 - 28590924
Alignment:
Q  39 tgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||| ||||||||||||||||||| | ||||||||||| ||| | || |||||||||||||||||    
T  28590858 tgacactaacatgttgacaccgataataatttgagaaaataacaaagttgaatgtaatcacaagtgt 28590924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 12704715 - 12704647
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    |||| ||||| | ||||| ||||||||||||||||||||||||| | |||| ||||| |||||||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacac 12704647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 27903582 - 27903698
Alignment:
Q  9 aagcacggacacagacacggataccagacatgaca-----caaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    ||||||||||||||||||||| ||| |||| ||||     | || ||||  |||| ||||| | |||||||||| || |||||| |||||||||| ||||    
T  27903582 aagcacggacacagacacggacaccggacacgacaagacaccaatatgtcaacacagataataatttgagaaaacgatataatttaatgtaatcataagt 27903681  T
Q  104 gttgtgtcagtgtcgga 120  Q
    |||||||| ||||||||    
T  27903682 gttgtgtcggtgtcgga 27903698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 25074789 - 25074858
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||||||||| | |||||||||||||||||||| | |||||||| | | |||||||| ||||| |||||    
T  25074789 gacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacac 25074858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 34409400 - 34409355
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||||||||| | || ||||||||||||||||||||||||||||||    
T  34409400 acaccgataatacttcgagaaaatgacataattcaatgtaatcaca 34409355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 52558182 - 52558141
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  52558182 cgataaaaatttgagaaaaggacataattcaatgtaatcaca 52558141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 6984764 - 6984812
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaag 102  Q
    |||||| |||||||||||||||||| ||| |||||||| ||||||||||    
T  6984764 gacaccaataaaattttgagaaaataacacaattcaatataatcacaag 6984812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 3180872 - 3180793
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacata 84  Q
    ||||||||||||||||| ||||||| ||| |||| |||||  ||| ||  |||  ||||||||||| |||||||||||||    
T  3180872 tatgaagcacggacacaaacacggacaccggacaggacactgacacgtctacaatgataaaattttaagaaaatgacata 3180793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 9210884 - 9210833
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| |||||| | ||||||||||||||||||||||||| ||||||| ||||    
T  9210884 gacaacgataataatttgagaaaatgacataattcaatggaatcacatgtgt 9210833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 25892478 - 25892529
Alignment:
Q  72 agaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||||||| |||||||| |||||||| | |||| |||||||||||||||||    
T  25892478 agaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggacac 25892529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 34307853 - 34307770
Alignment:
Q  40 gacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||| |||| | |||||||| ||| | ||||||||||| ||||| |||| |||||| | |||||| ||||| |||||||||||    
T  34307853 gacacgaacacgctgacaccgctaataatttgagaaaatcacatatttcagtgtaattataagtgtcgtgtcggtgtcggacac 34307770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 42076802 - 42076759
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    ||||||||| || ||||||||| |||||||||||||||||||||    
T  42076802 gataaaattgtgggaaaatgacctaattcaatgtaatcacaagt 42076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 52369789 - 52369840
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcgg 119  Q
    ||||||||||| ||||||||||||||||||| | |||| ||||| |||||||    
T  52369789 tttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcgg 52369840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 19323526 - 19323456
Alignment:
Q  35 gacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||| ||||| ||||||| ||||| ||||  | |||||||||||||||||||| ||| |||||||| ||||    
T  19323526 gacacgacactaacatgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacatgtgt 19323456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 13799501 - 13799546
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||||||||||||| | |||||||||||||||||||| | ||||||    
T  13799501 gttgacaccgataatagtttgagaaaatgacataattaagtgtaat 13799546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 19730254 - 19730198
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacacac 125  Q
    |||||||||||||||||||| ||||| |||||| |||||||  | |||||||||||||    
T  19730254 tttgagaaaatgacataattgaatgtgatcacatgtgttgt-accgtgtcggacacac 19730198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 19750844 - 19750788
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacacac 125  Q
    |||||||||||||||||||| ||||| |||||| |||||||  | |||||||||||||    
T  19750844 tttgagaaaatgacataattgaatgtgatcacatgtgttgt-acggtgtcggacacac 19750788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 44427855 - 44427892
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  44427855 tttgagaaaatgacataatccaatgtaatcacatgtgt 44427892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 24399696 - 24399660
Alignment:
Q  60 gataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||||| |||||||| |||||||||||||||||||||    
T  24399696 gataaatttttgagacaatgacataattcaatgtaat 24399660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 25652089 - 25652021
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    |||| ||||| | ||||||||||||| |||||||| |||| | | | ||||||||||||||| ||||||    
T  25652089 acacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacac 25652021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 34909866 - 34909914
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    |||| |||||||| | |||||||| |||||||||||||| |||||||||    
T  34909866 ttgagaccgataataatttgagaatatgacataattcaaagtaatcaca 34909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 96
Target Start/End: Complemental strand, 40017414 - 40017386
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaat 96  Q
    |||||||||||||||||||||||||||||    
T  40017414 tttgagaaaatgacataattcaatgtaat 40017386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 8763 - 8705
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  8763 acatgttgacatggataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 8953 - 8999
Alignment:
Q  59 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgt 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 14332395 - 14332454
Alignment:
Q  40 gacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  14332395 gacactaacaagtcgacaccgataaaattt-gagaaaatgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Original strand, 24176820 - 24176890
Alignment:
Q  55 acaccgataaaattttgagaaaa-tgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacaca 124  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||  |||| |||||||    
T  24176820 acaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgtcgtgttggtgttggacaca 24176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 40176604 - 40176654
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  40176604 acaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgt 40176654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 40686836 - 40686766
Alignment:
Q  35 gacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||||||  ||| || |||| |||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  40686836 gacatgacactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgt 40686766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  64 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 24462329 - 24462280
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||||||||||    
T  24462329 gacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 42005006 - 42004937
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    ||||| ||||| | |||||||||||||||||||| | |||||||| | |||||||||| |||||||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacac 42004937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 28170382 - 28170432
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    |||||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  28170382 gacaccaataaaattttga-aaaatgacataattcaatgtaataacaagtgt 28170432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 29415740 - 29415807
Alignment:
Q  46 aacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgtcag 113  Q
    |||||||||| || ||||| | ||| ||||||||||||||||||   |||||||| ||||||||||||    
T  29415740 aacatgttgaaactgataataatttaagaaaatgacataattcagcataatcacatgtgttgtgtcag 29415807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 43966816 - 43966859
Alignment:
Q  64 aaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||    
T  43966816 aaattttgagaaaatgatacaattcaatgtaatcacatgtgttg 43966859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 50233398 - 50233445
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||| | || ||||||| |||||||||||||||||||||||||||    
T  50233398 gttgacatcaattaaattttaagaaaatgacataattcaatgtaatca 50233445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 98
Target Start/End: Original strand, 3921681 - 3921711
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||||||||||||||||||    
T  3921681 tttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 8203835 - 8203873
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcacaagtgtt 106  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  8203835 tttgagaaaatgacataagtgaatgtaatcacaagtgtt 8203873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 40317882 - 40317832
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatc 97  Q
    |||||| |||| || |||||||||||||||||| ||||||||||| |||||    
T  40317882 acatgtggacatcggtaaaattttgagaaaatggcataattcaatataatc 40317832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 40747832 - 40747790
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||| ||||| | |||||||||||||||||||||||||||||    
T  40747832 gacacggataataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 6936443 - 6936390
Alignment:
Q  70 tgagaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtcggacac 123  Q
    |||||||||||||||||| | |||||||| | |||| ||||| |||||||||||    
T  6936443 tgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacac 6936390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 7988510 - 7988457
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 107  Q
    ||||| ||||| | ||| ||||| ||||||||||||||||||||| ||||||||    
T  7988510 gacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttg 7988457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 11571599 - 11571628
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatc 97  Q
    ||||||||||||||||||||||||||||||    
T  11571599 tttgagaaaatgacataattcaatgtaatc 11571628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 33202898 - 33202947
Alignment:
Q  49 atgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||||||||| | ||| | |||||||||||| ||||||||||||    
T  33202898 atgttgacaccgataataattttaaaaaatgacataaatcaatgtaatca 33202947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 38078770 - 38078669
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatga-cacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagt 103  Q
    ||||||||||||| || |||||||| ||| |||| || |||  ||| || ||||| | ||| | ||||| ||||| ||||||||||||||||| ||||||    
T  38078770 tatgaagcacggatacggacacggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagt 38078671  T
Q  104 gt 105  Q
    ||    
T  38078670 gt 38078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 11412827 - 11412783
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | | |||||||||||||||||||||||| ||||    
T  11412827 gacaccgataataatatgagaaaatgacataattcaatgtgatca 11412783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 19637768 - 19637812
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    ||||||||||| | ||| |||||||||||| ||||||||||||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatca 19637812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 22316390 - 22316422
Alignment:
Q  57 accgataaaattttgagaaaatgacataattca 89  Q
    |||||||||||||||||||||| ||||||||||    
T  22316390 accgataaaattttgagaaaataacataattca 22316422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 29230063 - 29230107
Alignment:
Q  52 ttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    ||||||||| ||| | |||||||||||||||||||| ||||||||    
T  29230063 ttgacaccggtaataatttgagaaaatgacataattgaatgtaat 29230107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 34184675 - 34184719
Alignment:
Q  61 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 105  Q
    ||||||| |||||||||| | ||||||||||||||||||| ||||    
T  34184675 ataaaatcttgagaaaataatataattcaatgtaatcacatgtgt 34184719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 39410639 - 39410683
Alignment:
Q  51 gttgacaccgataaaattttgagaaaatgacataattcaatgtaa 95  Q
    ||||||||||||||||||||| || ||  ||||||||||||||||    
T  39410639 gttgacaccgataaaattttgggataacaacataattcaatgtaa 39410683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 42325561 - 42325601
Alignment:
Q  55 acaccgataaaattttgagaaaatgacataattcaatgtaa 95  Q
    |||||||||| | |||||||||||||||||||||| |||||    
T  42325561 acaccgataataatttgagaaaatgacataattcagtgtaa 42325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 47989443 - 47989483
Alignment:
Q  5 tatgaagcacggacacagacacggataccagacatgacaca 45  Q
    ||||||||| ||| |||||||||||||||||||| ||||||    
T  47989443 tatgaagcatggatacagacacggataccagacacgacaca 47989483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 240114 - 240036
Alignment:
Q  20 cagacacggataccagacatgacacaaacatgttgacaccgataaaattttgagaaaatgacataattcaatgtaatca 98  Q
    |||||||||| ||| ||||||||||  ||||||||||| | |||| | ||||||||||| | |||||||||||||||||    
T  240114 cagacacggacaccggacatgacacggacatgttgacaactataataatttgagaaaataatataattcaatgtaatca 240036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 99886 - 99935
Alignment:
Q  47 acatgttgacaccgataaaattttgagaaaatgacataattcaatgtaat 96  Q
    |||||| ||||||||||| | ||| ||||||| |||||||||||||||||    
T  99886 acatgtcgacaccgataataattttagaaaataacataattcaatgtaat 99935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 7704 - 7736
Alignment:
Q  68 tttgagaaaatgacataattcaatgtaatcaca 100  Q
    ||||||||||||||||||||||||| |||||||    
T  7704 tttgagaaaatgacataattcaatgcaatcaca 7736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 225327 - 225271
Alignment:
Q  54 gacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttgtgt 110  Q
    ||||| ||||| | ||||||||||||||||||| ||||||||| | |||||| ||||    
T  225327 gacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgt 225271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University