View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_high_27 (Length: 357)
Name: NF20367_high_27
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_high_27 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 38726272 - 38726596
Alignment:
| Q |
16 |
ctctccatcttactccattttgtaacattaagtccatcagccctaatgctttttgcacccaaatttacaccattatcaccaacaaatgaaacttttaaat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38726272 |
ctctccatcttactccattttgtaacattaagtccatcagccctaatgctttttgcacccaaatttacaccattaacaccaacaaatgaaacttttaaat |
38726371 |
T |
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| Q |
116 |
caattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttcatgccccaataaccaggattagagatgccaacaccgct |
215 |
Q |
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| T |
38726372 |
caattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttcatgccccaataaccaggattagagataccaacaccgct |
38726471 |
T |
|
| Q |
216 |
acgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctcaaaactagaggacatatcagttgatacagtaatggaagat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38726472 |
acgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctcaaaactagaggacatatcagttgatacagtaatggaagat |
38726571 |
T |
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| Q |
316 |
ttattctgatctccaataattgtcc |
340 |
Q |
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||||||||||||||||||||||||| |
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| T |
38726572 |
ttattctgatctccaataattgtcc |
38726596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 34208999 - 34208874
Alignment:
| Q |
177 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
276 |
Q |
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| T |
34208999 |
catgccccaaaattcaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctaaacgtaaagcaaccttattacgctca |
34208900 |
T |
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| Q |
277 |
aaactagaggacatatcagttgatac |
302 |
Q |
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|||| |||||| |||||||||||| |
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| T |
34208899 |
aaacaagaggaacgatcagttgatac |
34208874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 34153610 - 34153688
Alignment:
| Q |
99 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
177 |
Q |
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| T |
34153610 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
34153688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 34168957 - 34168879
Alignment:
| Q |
99 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
177 |
Q |
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| T |
34168957 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
34168879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 34209167 - 34209089
Alignment:
| Q |
99 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
177 |
Q |
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| T |
34209167 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
34209089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 34168789 - 34168664
Alignment:
| Q |
177 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
276 |
Q |
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|||||||||| | |||||||| ||||| |||||||| | | | ||||| |||| |||||||||||||| ||| ||||| ||||| ||||||| |||| |
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| T |
34168789 |
catgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactca |
34168690 |
T |
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| Q |
277 |
aaactagaggacatatcagttgatac |
302 |
Q |
| |
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|||| ||| || |||||||||||| |
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| T |
34168689 |
aaacaagatgaacgatcagttgatac |
34168664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 302
Target Start/End: Original strand, 34155129 - 34155241
Alignment:
| Q |
190 |
ccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctcaaaactagaggaca |
289 |
Q |
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| T |
34155129 |
ccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactcaaaacaagatgaac |
34155228 |
T |
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| Q |
290 |
tatcagttgatac |
302 |
Q |
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|||||||||||| |
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| T |
34155229 |
gatcagttgatac |
34155241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 29111 - 28986
Alignment:
| Q |
177 |
catgccccaataaccaggattagagatgccaacaccgctacgcggacaagattttccttgacaaagaatatccatgcgtaacgcaactttattacgctca |
276 |
Q |
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|||||||||| | |||||||| ||||| |||||||| | | | ||||| |||| |||||||||||||| ||| ||||| ||||| ||||||| |||| |
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| T |
29111 |
catgccccaaaatccaggattggagataccaacaccaccaagtggacatgattgtccttgacaaagaacatctnaacgtaaagcaaccttattacnctca |
29012 |
T |
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| Q |
277 |
aaactagaggacatatcagttgatac |
302 |
Q |
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|||| ||| || |||||||||||| |
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| T |
29011 |
aaacaagatgaacgatcagttgatac |
28986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 29279 - 29201
Alignment:
| Q |
99 |
aaatgaaacttttaaatcaattggaccaagtgatttaacatgcaacacgaccttatacattttaccttgttcaatgttc |
177 |
Q |
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||||||||||| ||||| ||| |||||||||||| |||||| ||||| || |||||| |||| ||||| ||||||||| |
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| T |
29279 |
aaatgaaacttgtaaattaataggaccaagtgatctaacatagaacaccactttatactttttcccttgctcaatgttc |
29201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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