View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_high_29 (Length: 355)
Name: NF20367_high_29
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 26499275 - 26499597
Alignment:
| Q |
12 |
atgaattaaataatgtgtattttaattaaatgatatacgtatgtaagtgagtgtgtgtccaaataatgcatggaatcattgtgaccatataagtactttc |
111 |
Q |
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| T |
26499275 |
atgaattaaataatgtgtattttaattaaatgatatacgtatgt----gagtgtgtgtccaaataatgcatggaatcattgtgatcatataagtactttc |
26499370 |
T |
|
| Q |
112 |
ctttaacatgatatattnnnnnnnnntgcataaatttaaaattgattcaatttcaaagtgaaagctataaattgttgcttgttccctgaccaagattggt |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26499371 |
ctttaacatgatatat-aaaaaaaaatgcataaatttaaaattgattcaatttcaaagtgaaagctataaattgttgcttgttccctgaccaagactggt |
26499469 |
T |
|
| Q |
212 |
tctcattatataattcaaacctcaaaaaatctggtcaagtagcttttgaccactacaatctcaatattaggagcactaaccaaataaaacacttaatctt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
26499470 |
tctcattatataattcaaacctcaaaaaatctggtcaagtagcttttgaccactacaatctcaatattaggaccattaaccaaataaaacacttaatctt |
26499569 |
T |
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| Q |
312 |
ccttactttactgaaaatggcttctaat |
339 |
Q |
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|||||| ||| ||||||||||||||||| |
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| T |
26499570 |
ccttacattagtgaaaatggcttctaat |
26499597 |
T |
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