View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_high_30 (Length: 351)
Name: NF20367_high_30
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_high_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 7553749 - 7554102
Alignment:
| Q |
1 |
caaggtagtaaaaatgagaagtctaaattgatattatccaaagtaagtggtttaaannnnnnnnnnnnnnnnnnacgtgaataattaattactcactact |
100 |
Q |
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| T |
7553749 |
caaggtagtaaaaatgagaagtctaaattgatattatccaaagtaagtggtttaaattttgattttgattttttacgtgaataattaattactcactact |
7553848 |
T |
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| Q |
101 |
tgtcaaaaacaaaattaattactcactat---atgatatttatcctcaaaaatatctacaaaatctagtggtcaattcaattagctaatacaatttggga |
197 |
Q |
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| T |
7553849 |
tgtcaaaaacaaaattaattactcactattatatgatatttatcctcaaaaatatctacaaaatctagtggtcaattcaattagctaatacaatttggga |
7553948 |
T |
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| Q |
198 |
tttcaaatcacatgcacactaccaaaaacagaaaactctcttgcagatagtaaaatggataaataaactcttagttgcagcaacaaaaagtatataggtt |
297 |
Q |
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| T |
7553949 |
tttcaaatcacatgcacactaccaaaaacagaaaactctcttgcagataataaaatggataaataaactcctagttgcagcaacaaaaagtatataggtt |
7554048 |
T |
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| Q |
298 |
aaagttttgtccaaaaacgaatatcattatgtaattgcaccatccaacaacata |
351 |
Q |
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| T |
7554049 |
aaagttttgtccaaaaacgaatatcattatgtaattgcaccatccaacaacata |
7554102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 8047618 - 8047572
Alignment:
| Q |
221 |
aaaaacagaaaactctcttgcagatagtaaaatggataaataaactc |
267 |
Q |
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| T |
8047618 |
aaaaacagaaaactctcttgcatataataaaatggataaataaactc |
8047572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 48250053 - 48250023
Alignment:
| Q |
191 |
tttgggatttcaaatcacatgcacactacca |
221 |
Q |
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| T |
48250053 |
tttgggatttcaaatcacatgcacactacca |
48250023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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