View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_high_41 (Length: 296)
Name: NF20367_high_41
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 51824826 - 51825105
Alignment:
| Q |
1 |
tgcatcaaacaaatctcatcacaaagtagttctagacgttgagttcacccttgattgagaatgtttcaacatttcaataaaggatagacagagacatgga |
100 |
Q |
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| T |
51824826 |
tgcatcaaacaaatctcatcacaaattagttcttgacgttgaattcacccttgattgagaatgtttcaacatttcaatcaaggatagacagagacatgga |
51824925 |
T |
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| Q |
101 |
aaaaggatttattgtgcgagccaatttgagttatttaagattacatgtaggcagatgcaacatgctatatttccttgaataaaaactttaatctaatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51824926 |
aaaaggatttattgtgcgagccaatttgagttatttaagattacatgtaggcagatgcaacatgctatatttccttgaataaaaactttaatctaatttg |
51825025 |
T |
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| Q |
201 |
cttgagaggcatacctgacattccttttcttcatgaatcgaagaagtgaagcttttctagcaatcaccatatctttaaag |
280 |
Q |
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| T |
51825026 |
cttgagaggcatacctgacattccttttctccatgaatcgaagaagtgaagcttttctagcaatcaccatatctttaaag |
51825105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 51827918 - 51828004
Alignment:
| Q |
175 |
ttgaataaaaactttaatctaatttgcttgagaggcatacctgacattccttttcttcatgaatcgaagaagtgaagcttttctagc |
261 |
Q |
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||||||| |||||| ||| ||||||| ||||||||||||||| | ||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
51827918 |
ttgaatataaacttgaatttaatttgtttgagaggcatacctatctttcctcttctccatgaatcgacgaagtgaagcttttctagc |
51828004 |
T |
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