View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20367_high_47 (Length: 270)
Name: NF20367_high_47
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_high_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 3874008 - 3874266
Alignment:
| Q |
10 |
gagatgaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgat |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3874008 |
gagaagaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccaaaaaagctgat |
3874107 |
T |
|
| Q |
110 |
aaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcatcatcttccaattcactctctgatctgtgat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3874108 |
aaagatatgactaaaaccaatacaaaaagtaacattggtaaccataaagtaacactaattggttgttcatcatcttccaactcactctctgatctgtgat |
3874207 |
T |
|
| Q |
210 |
ctatgtatagaggagaagccacagctagaactaccaagcttatggctgctgctctctca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
3874208 |
ctatgtatagaggagaagccacagctagaactactaagcttatggctgctactctctca |
3874266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 3884537 - 3884796
Alignment:
| Q |
10 |
gagatgaataagaatgaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgat |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3884537 |
gagaagaataagaatgaaaacaataccaccagaagaac-accaactctatgaatccaattacgatcaaaccttgtgaagctcttatctaaaaaagctgat |
3884635 |
T |
|
| Q |
110 |
aaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcatcatcttccaattcactctctgatctgtgat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3884636 |
aaagatatgactaaaaccaatacaaaaagcaacattggtaaccataaagtaacactaataggttgttcatcatcttccaattcactctctgatctgtgat |
3884735 |
T |
|
| Q |
210 |
ctatgtatagaggagaagccacagctagaactaccaagcttatggctgctgctctctcaaa |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3884736 |
ctatgtatagaggagaagccacagctagaactaccaagcttatggctgctactctctcaaa |
3884796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University