View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_high_60 (Length: 203)

Name: NF20367_high_60
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_high_60
NF20367_high_60
[»] chr7 (8 HSPs)
chr7 (1-192)||(17720712-17720903)
chr7 (1-192)||(235309-235500)
chr7 (1-192)||(47877060-47877251)
chr7 (1-192)||(11277124-11277315)
chr7 (1-190)||(4938000-4938189)
chr7 (9-192)||(29968052-29968234)
chr7 (7-192)||(37919621-37919806)
chr7 (99-135)||(39931537-39931573)
[»] chr8 (11 HSPs)
chr8 (1-192)||(9922678-9922869)
chr8 (1-190)||(8299882-8300071)
chr8 (1-192)||(13396465-13396656)
chr8 (1-190)||(7924465-7924654)
chr8 (1-192)||(32266641-32266830)
chr8 (1-192)||(41665241-41665432)
chr8 (7-192)||(172180-172365)
chr8 (9-83)||(13879367-13879441)
chr8 (98-192)||(20824373-20824467)
chr8 (9-58)||(25090598-25090647)
chr8 (120-192)||(2170419-2170491)
[»] chr5 (15 HSPs)
chr5 (1-192)||(31641588-31641779)
chr5 (1-192)||(28535547-28535738)
chr5 (1-192)||(35983663-35983854)
chr5 (1-192)||(30732186-30732377)
chr5 (1-192)||(42928208-42928399)
chr5 (6-192)||(12825276-12825462)
chr5 (1-190)||(42513799-42513988)
chr5 (1-192)||(23238461-23238652)
chr5 (8-192)||(27117040-27117224)
chr5 (98-192)||(8300151-8300245)
chr5 (9-83)||(27795669-27795743)
chr5 (120-183)||(26072978-26073041)
chr5 (98-192)||(25857393-25857487)
chr5 (98-192)||(27767119-27767213)
chr5 (98-192)||(33385343-33385437)
[»] chr3 (11 HSPs)
chr3 (1-192)||(34332687-34332878)
chr3 (1-192)||(40930400-40930591)
chr3 (1-190)||(7312855-7313044)
chr3 (1-190)||(2364356-2364545)
chr3 (1-149)||(7032426-7032574)
chr3 (1-192)||(19920101-19920292)
chr3 (1-190)||(10323443-10323632)
chr3 (105-183)||(20532025-20532103)
chr3 (98-192)||(29523714-29523808)
chr3 (120-193)||(12342217-12342290)
chr3 (153-190)||(15312662-15312699)
[»] chr6 (7 HSPs)
chr6 (1-192)||(21168276-21168467)
chr6 (7-192)||(2553714-2553899)
chr6 (1-192)||(24767301-24767487)
chr6 (65-192)||(18651170-18651297)
chr6 (29-192)||(15958713-15958876)
chr6 (12-158)||(14372874-14373020)
chr6 (99-183)||(33185522-33185606)
[»] chr4 (11 HSPs)
chr4 (1-192)||(1828412-1828603)
chr4 (1-192)||(15740298-15740489)
chr4 (1-190)||(23642463-23642652)
chr4 (1-192)||(19755344-19755535)
chr4 (1-192)||(19784271-19784462)
chr4 (1-192)||(47685767-47685958)
chr4 (9-192)||(7403990-7404177)
chr4 (1-190)||(47418883-47419072)
chr4 (69-190)||(13270831-13270952)
chr4 (9-83)||(54483039-54483113)
chr4 (9-85)||(2821917-2821993)
[»] chr1 (5 HSPs)
chr1 (1-192)||(11908977-11909168)
chr1 (1-190)||(35541128-35541317)
chr1 (1-190)||(6050682-6050871)
chr1 (51-192)||(51052557-51052698)
chr1 (98-192)||(16917778-16917872)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-190)||(105715-105904)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-192)||(3329-3520)
[»] chr2 (3 HSPs)
chr2 (1-192)||(41207093-41207284)
chr2 (79-192)||(4552246-4552359)
chr2 (9-58)||(40176879-40176928)
[»] scaffold0369 (1 HSPs)
scaffold0369 (111-192)||(11187-11268)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 17720903 - 17720712
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17720903 aggaagagttggtagaggagtttanggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatgg 17720804  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17720803 gtattccgttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 17720712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 235309 - 235500
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||| ||||||||||||||| || || |||||||||| ||||||| || |||||||||||||||||||||||  |||||||||||| ||| |||| |||    
T  235309 aggaaaagttggtagaggagtgtagggttttattactaacagtttccttacaggaatcagtgacagatagatgactttggttaccaaatcaggatggtgg 235408  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||||||| ||||||||||| ||||||| || |||||||||||  |||||||||||||||||| ||||||||    
T  235409 gtattctgtacgtggagtctatgacatgttgacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttc 235500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 47877251 - 47877060
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||||||||||||||||||| |  || |||||||||| ||||||| |||||||||||||||||||| |||||  |||||||||| | ||| |||| |||    
T  47877251 aggaagagttggtagaggagtgtggggttttattactaacagtttccttgcaggaatcagtgacagacagatgactttggttacctaatcaggatggtgg 47877152  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||  || |||||||  ||||||||||||||||||||| ||||||| || |||||||||||   ||||||||||||||||| ||||||||    
T  47877151 gtattatgtacgtggagtttatgacatgctgacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttc 47877060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 11277124 - 11277315
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||| |||| | ||| ||||||||    
T  11277124 aggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatgg 11277223  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || || || ||||||| |||||| ||||||||||||||| |||| || || ||||| || ||  |||||||||||||||||| ||||||||    
T  11277224 gtactctgtacgtggagtctatgatatgctgacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttc 11277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 4938000 - 4938189
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  4938000 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatgg 4938099  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  4938100 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggt 4938189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 29968234 - 29968052
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattccg 108  Q
    ||||||||||||| || ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||| |||| | ||| |||||||| || || |    
T  29968234 ttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatgg-tactctg 29968136  T
Q  109 ttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    | |||||||||||||| ||||||||||||||| |||| || || ||||| || |   |||||||||||||||||| ||||||||    
T  29968135 tacgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttc 29968052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 37919806 - 37919621
Alignment:
Q  7 agttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattc 106  Q
    ||||||||||||||| ||  | |||||||||| ||||||| |||||||||||||||||| | | |||| |||| ||||| |  || || | ||| |||||    
T  37919806 agttggtagaggagtgtagagttttattactaacagtttctttgcaggaatcagtgacaaacatatggctttgattacctaaacaggagggtgggtattc 37919707  T
Q  107 cgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || |||||||  ||||||||||||||||||||| ||||||| || ||||||||  |  || ||||||||||| ||| ||||||||    
T  37919706 tgtgcgtggagtatatgacatgctgacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttc 37919621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 39931537 - 39931573
Alignment:
Q  99 ggttattccgttcgtggagcctatgacatgctgacat 135  Q
    ||||||||||||||||| | |||||||||||||||||    
T  39931537 ggttattccgttcgtggtgtctatgacatgctgacat 39931573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 7e-88; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 9922869 - 9922678
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9922869 aggaagagttggtagaggagtctagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatgg 9922770  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9922769 gttttccgttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 9922678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 8300071 - 8299882
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  8300071 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatgg 8299972  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| || |||| || ||||| || || ||||| ||||||||||||| ||||||    
T  8299971 gtattctgtacgtggagtctatgacatgctgacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggt 8299882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 13396656 - 13396465
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || || |||||||||| || |||| |||||||||||||||||||| |||||| |||||||||| | ||| || | |||    
T  13396656 aggaggagttggtagaggagtgtagggttttattactaacaatttctttgcaggaatcagtgacagacagatggctttggttacctaatcaggagggtgg 13396557  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||| | |||||||||||||||||||||| ||||||| || ||||||||  |  |||||||||||||||||| ||| ||||    
T  13396556 gtattctgtacgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttc 13396465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7924654 - 7924465
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  7924654 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatgg 7924555  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  7924554 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggt 7924465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 32266830 - 32266641
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || ||||||||| ||| ||||||| ||||||||||||||| |||| |||||| ||||| |||| | ||| ||||||||    
T  32266830 aggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgtcagacagatggctttgggtacctaatcatgatgatgg 32266731  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || |||||||||||||  |||||||| |||||  |||| || || ||||| || || ||||||||||||||||||| ||||||||    
T  32266730 gtattctgtacgtggagcctatg--atgctgacttcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttc 32266641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 41665241 - 41665432
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || || |||||||||| ||||||| || ||||||||||||||||| |||||  |||||||||| | | | || | |||    
T  41665241 aggaggagttggtagaggagtgtagggttttattactaacagtttctttacaggaatcagtgacagacagatgactttggttacctaattaggagggtgg 41665340  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| ||  |||| | |||||||||||||||||||||| ||||||| || ||||||||  |  |||||||||||||||||| ||||||||    
T  41665341 gtattctgtatgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttc 41665432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 172365 - 172180
Alignment:
Q  7 agttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattc 106  Q
    ||||||||||||||| || |||||| ||||||  |||||| |||||||||||||||| ||| |||||| | |||||||| | | | |||||||| |||||    
T  172365 agttggtagaggagtgtagggctttgttactaatagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatgggtattc 172266  T
Q  107 cgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || ||||||| |||||||||||||||||||||| |||||   || ||||| || ||  |||| ||||||||||||| ||||||||    
T  172265 tgtacgtggagtctatgacatgctgacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttc 172180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 13879367 - 13879441
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggtta 83  Q
    ||||||||||||| || ||||||||||||| |||| || ||||||||||| || || ||||||||| | ||||||    
T  13879367 ttggtagaggagtgtagggctttattactaacagtctctttgcaggaatccgttactgatagatgggtgtggtta 13879441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 20824467 - 20824373
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||| ||| || |||||| || ||||||||||| | || |||||  | ||||||||  |||||||||||||||||| ||||||||    
T  20824467 tggttatactgttcatggtgcatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttc 20824373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 25090647 - 25090598
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatc 58  Q
    ||||||||||||| || ||||||||||||| |||| || |||||||||||    
T  25090647 ttggtagaggagtgtagggctttattactaacagtctctttgcaggaatc 25090598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 2170491 - 2170419
Alignment:
Q  120 tatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||||| ||||||||||| | || |||||  | ||||||||  |||||||||| ||||||| ||||||||    
T  2170491 tatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttc 2170419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 7e-88; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 31641779 - 31641588
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31641779 aggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatgatgg 31641680  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31641679 atattccgttcgtggagcatatgacatgctgacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttc 31641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 28535547 - 28535738
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| | |    
T  28535547 aggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaatcaatgacagatagatggctttggttaccaactcaggatggtag 28535646  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || || || | |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  28535647 gtactctgtacatggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttc 28535738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 35983663 - 35983854
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| | |||||||||||| ||| |||| |||    
T  35983663 aggaggagttggtagaggagtttagggctttattactaacagtttcattacaggaatcagtgacagatagatagctttggttaccaaatcaggatggtgg 35983762  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || || || |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  35983763 gtactctgtacgtggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttc 35983854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 30732186 - 30732377
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||| ||| |||||| | |||||||| | ||| ||||||||    
T  30732186 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgg 30732285  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||||    
T  30732286 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttc 30732377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 42928399 - 42928208
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||||||||||||||||||| || || |||||||||  | ||||  || |||||||||||||||||||||||| | |||||||||| ||| |||| |||    
T  42928399 aggaagagttggtagaggagtgtagggttttattacttaccgtttttttacaggaatcagtgacagatagatggttgtggttaccaaatcaggatggtgg 42928300  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||||||||||||||| ||| | ||||| || ||||||| |||  |||||||||||||| ||| ||||||||    
T  42928299 gtattctgtacgtggagtctatgacatgctgacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttc 42928208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 12825462 - 12825276
Alignment:
Q  6 gagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttatt 105  Q
    |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||| ||| |||||| | |||||||| | ||| |||||||| ||||    
T  12825462 gagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgggtatt 12825363  T
Q  106 ccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    | |  ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||| ||||    
T  12825362 ctgcacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttc 12825276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 42513988 - 42513799
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  42513988 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatgg 42513889  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  42513888 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggt 42513799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 23238652 - 23238461
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || ||||||||| ||| ||||||| |||||||||||||||||||| |||||| ||||| |||| | ||| ||||||||    
T  23238652 aggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatgatgg 23238553  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || || || ||||||| |||||| ||||| ||||||||| |||| || || ||||| || ||  |||||||||||||||||| | ||||||    
T  23238552 gtactctgtacgtggagtctatgatatgctaacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttc 23238461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 27117040 - 27117224
Alignment:
Q  8 gttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattcc 107  Q
    |||||||||||||| || |||||| |||||| ||||||| |||||||||||||||| ||| |||||| | |||||||| | | | |||||||| |||||     
T  27117040 gttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatgggtattct 27117139  T
Q  108 gttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    || ||||||| |||||||||||||||||||||| |||||   || ||||| || ||  |||| ||||||||||||| ||||||||    
T  27117140 gtacgtggagtctatgacatgctgacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttc 27117224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 8300151 - 8300245
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||||||| || |||||| || ||||||||||| | || |||||  | ||||||||  |||||||||||||||||| ||||||||    
T  8300151 tggttatactgttcgtggtgcatatgacctgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttc 8300245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 27795743 - 27795669
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggtta 83  Q
    ||||||||||||| || ||||||||||||| ||||||| ||| ||||||| || || ||||||||| | ||||||    
T  27795743 ttggtagaggagtgtagggctttattactaacagtttctttggaggaatccgttactgatagatgggtgtggtta 27795669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 26073041 - 26072978
Alignment:
Q  120 tatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcata 183  Q
    |||||| |||||||||| ||| | ||||| || || |||||||| |||||||||||||||||||    
T  26073041 tatgacttgctgacatcgcaggaacagccccatttgcatcaaaatttggagttaatttggcata 26072978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 25857393 - 25857487
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||||||| || |||||| || ||||||||||| | || ||||   | ||||||||  |||||||||||||||||| ||||||||    
T  25857393 tggttatactgttcgtggtgcatatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttc 25857487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 27767213 - 27767119
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||||||| |  |||||| || ||||||||||| | || |||||  | ||||||||  |||||||||||||||||| ||||||||    
T  27767213 tggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttc 27767119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 33385343 - 33385437
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||||||| |  |||||| || ||||||||||| | || |||||  | ||||||||  |||||||||||||||||| ||||||||    
T  33385343 tggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttc 33385437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 34332687 - 34332878
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || || |||||||||| ||||||| ||||||||||||||| |||| |||||| |||||||||| | ||| |||| |||    
T  34332687 aggaggagttggtagaggagtgtagggttttattactaacagtttctttgcaggaatcagtgtcagacagatggctttggttacctaatcaggatggtgg 34332786  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||  || |||||||||||||||||||||||||||||| ||||||| || |||||||| ||  |||||||||||||||||| ||||||||    
T  34332787 gtattatgtacgtggagcctatgacatgctgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttc 34332878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 40930400 - 40930591
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||||||||||||||||||| || || |||||||||| ||||||| ||||| |||||||||||| |||||||| |||||||||||| ||| |||| ||     
T  40930400 aggaagagttggtagaggagtgtagggttttattactaacagtttctttgcaagaatcagtgacaaatagatggctttggttaccaaatcaggatggtgt 40930499  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||||||||||||||||||| |||| ||||| || ||||||||| |||||||| |||| |||| ||||||||    
T  40930500 gtattctgtacgtggagtctatgacatgctgacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttc 40930591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7313044 - 7312855
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||| ||| |||||| | |||||||| | ||| ||||||||    
T  7313044 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgg 7312945  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  7312944 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggt 7312855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 2364545 - 2364356
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  2364545 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatgg 2364446  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  2364445 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggt 2364356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7032574 - 7032426
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||| |||||||||| ||||||||  || ||  || | |||    
T  7032574 aggaagagttggtagaggagtttagggctttattactaacagttacattgcaggaatcggtgatagatagatggctttggttattaattctggacggtgg 7032475  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcct 149  Q
     ||||  |||||||||| |||||||||||||||||||||| ||||||||    
T  7032474 gtattttgttcgtggagtctatgacatgctgacatcacaggagcagcct 7032426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 19920101 - 19920292
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||| ||| |||||| | |||||||| | ||| ||||||||    
T  19920101 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgg 19920200  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||||||| ||||||||||| || |||| || ||||| ||  |  |||| ||||||||||||| ||||||||    
T  19920201 gtattctgtacgtggagtctatgacatgttgacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttc 19920292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 10323443 - 10323632
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  |||||||||| | | |||||| | ||||| ||||||    
T  10323443 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctagttacctaatcaagctgatgg 10323542  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||| ||||||||||||||| ||||||| || ||||| || |   |||| ||||||||||||| ||||||    
T  10323543 gtattcagtacgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggt 10323632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 20532025 - 20532103
Alignment:
Q  105 tccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcata 183  Q
    ||||||||||| |  ||||||||||||||||| ||  |||| ||||| |||||||||||  |||| |||||||||||||    
T  20532025 tccgttcgtggtgtttatgacatgctgacatcccatgagcatcctcatttacatcaaaatatggaattaatttggcata 20532103  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 29523714 - 29523808
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||||||| |  |||||| || ||||||||||| | || |||||  | ||||||||  |||||||||||||||||| ||||||||    
T  29523714 tggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttc 29523808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 12342217 - 12342290
Alignment:
Q  120 tatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttct 193  Q
    |||||| || ||||||||||| | || |||||  | ||||||||  |||||||||||||||||| |||||||||    
T  12342217 tatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttct 12342290  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 15312699 - 15312662
Alignment:
Q  153 ttacatcaaaacttggagttaatttggcatacacaggt 190  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  15312699 ttacatcaaaatttggagttaatttggcataaacaggt 15312662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 21168467 - 21168276
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||| | ||| |||| |||    
T  21168467 aggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcatgatggtgg 21168368  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||| ||| ||||||||||| ||||||| || ||||| || ||  |||||||||||||||||| | ||||||    
T  21168367 gtattctgtacgtggagtctatgatatgttgacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttc 21168276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 2553899 - 2553714
Alignment:
Q  7 agttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattc 106  Q
    |||||||| |||||| || ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||| ||||| | ||| |||| ||| |||||    
T  2553899 agttggtaaaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttgattacctaatcatgatggtgggtattc 2553800  T
Q  107 cgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || ||||||| |||||| ||||||||||||||  ||||||| || ||||| || ||  |||||||||||||||||| ||||||||    
T  2553799 tgtacgtggagtctatgatatgctgacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttc 2553714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 24767301 - 24767487
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||||||||||||||||||| || || | |||||||| ||||||| ||| ||     ||||||| |||||||| | |||||||||| ||| |||||| |    
T  24767301 aggaagagttggtagaggagtgtagggttgtattactaacagtttccttgaag-----agtgacaaatagatggctatggttaccaaatcaggatgatag 24767395  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||||||||||||||||||| |||||||  | |||||||||||  |||||||||||| ||||| ||||||||    
T  24767396 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttc 24767487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 18651170 - 18651297
Alignment:
Q  65 agatagatggatttggttaccaactcaagatgatggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaac 164  Q
    |||||||||| | |||||||||| ||| |||| ||| ||||| || | ||||| |||||||||||||||||||||| ||||||| || ||| |||||||     
T  18651170 agatagatggttgtggttaccaaatcaggatggtgggtattctgtacatggagtctatgacatgctgacatcacaggagcagccccagttagatcaaaat 18651269  T
Q  165 ttggagttaatttggcatacacaggttc 192  Q
     |||||||||||||||||| ||||||||    
T  18651270 atggagttaatttggcataaacaggttc 18651297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 15958713 - 15958876
Alignment:
Q  29 tttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattccgttcgtggagcctatgacatg 128  Q
    |||||||||  ||||||| |||||||||||| || | ||||||||| | ||||||||   ||||| || ||| ||||| ||||| || |  | |||||||    
T  15958713 tttattactgacagtttctttgcaggaatcattgcctgatagatggttgtggttaccggatcaaggtggtgggtattcagttcgcggtgtgtctgacatg 15958812  T
Q  129 ctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    |||||||||||| | || | ||| ||||||| |||  || ||||||| ||||||| ||||||||    
T  15958813 ctgacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttc 15958876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 14372874 - 14373020
Alignment:
Q  12 gtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattccgttc 111  Q
    |||||||||| || ||||||||||||  ||||||| ||||||||||| ||  | ||||||||| | ||||||||   ||| |  | |||||| || || |    
T  14372874 gtagaggagtgtagggctttattactgacagtttctttgcaggaatctgtttccgatagatggttgtggttaccggatcagggaggtggttactcagtcc 14372973  T
Q  112 gtggagcctatgacatgctgacatcacagaagcagcctcacttacat 158  Q
    |||| |  ||||||||||||||||| ||| | |||||||| ||||||    
T  14372974 gtggggtgtatgacatgctgacatcccaggaacagcctcagttacat 14373020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 33185606 - 33185522
Alignment:
Q  99 ggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcata 183  Q
    ||||| ||||||| ||| |  ||||||||| |||||||| || |||| |  || |||||| |||||||||| |||||||||||||    
T  33185606 ggttactccgttcatggtgtttatgacatgttgacatcataggagcatctccatttacattaaaacttggaattaatttggcata 33185522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1828412 - 1828603
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| ||||||||||||||||  | ||||||||||||| ||||||| |||||||| |||||||| || | |||| |||||||||| | ||| |||| |||    
T  1828412 aggaggagttggtagaggagtggagggctttattactaacagtttctttgcaggattcagtgactgacaaatggctttggttacctaatcatgatggtgg 1828511  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     |||||||| |||||||||||||| ||| ||||||||||| ||||||| || |||||||| ||  |||||||||||||||||| ||||||||    
T  1828512 gtattccgtacgtggagcctatgatatgttgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttc 1828603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 15740489 - 15740298
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||| | ||| |||| |||    
T  15740489 aggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcatgatggtgg 15740390  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||||| |||||| ||| |||||||| || ||||||| || ||||| || ||  |||||||||||||||||| ||||||||    
T  15740389 gtattctgtacgtggagtctatgatatgttgacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttc 15740298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 23642463 - 23642652
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  23642463 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatgg 23642562  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  23642563 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggt 23642652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 19755535 - 19755344
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||||||||||||| |||||| |||||||||| | ||| || | |||    
T  19755535 aggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcaggagggtgg 19755436  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||| | |||||||||||||||||||||  ||||||| || || |||||  |  |||||||||||||||||| ||||||||    
T  19755435 gtattctgtacgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttc 19755344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 19784271 - 19784462
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||||||||||||| |||||| |||||||||| | ||| || | |||    
T  19784271 aggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcaggagggtgg 19784370  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| || ||||| | |||||||||||||||||||||  ||||||| || || |||||  |  |||||||||||||||||| ||||||||    
T  19784371 gtattctgtacgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttc 19784462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 47685767 - 47685958
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| ||||||||||| |||| ||| |||||| |||||||||| | ||| ||||||||    
T  47685767 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcggtgatagacagatggctttggttacctaatcatgatgatgg 47685866  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| |||||||||| ||| |||||||||||||||||  |||||||  | ||||| || ||  |||| |||||||| |||| ||||||||    
T  47685867 gtattctgttcgtggagtctacgacatgctgacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttc 47685958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 9 - 192
Target Start/End: Complemental strand, 7404177 - 7403990
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatg-atggt---tat 104  Q
    ||||||||| ||| || || |||||||||  ||||||| ||||| |||||||||||| |||||||| | |||||||||| ||| |||| |||||   |||    
T  7404177 ttggtagagaagtgtagggttttattacttacagtttccttgcaagaatcagtgacaaatagatggttatggttaccaaatcaggatgcatggtgggtat 7404078  T
Q  105 tccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    || || ||||||| |||||||||||||||||||||| ||||||| || |||||||||||  || ||||||||||||||| ||| ||||    
T  7404077 tctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttc 7403990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 47419072 - 47418883
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| ||| |||||||||||| || |||||| |||||| || |||| |||||||| ||||||  |||||||||| | |||||||| | ||||| ||||||    
T  47419072 aggaggaggtggtagaggagtgtagggctttgttactaacaatttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgg 47418973  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||| ||||||||||||||| ||||||| || ||||| || |   |||| ||||||||||||| ||||||    
T  47418972 gtattcagtacgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggt 47418883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 13270831 - 13270952
Alignment:
Q  69 agatggatttggttaccaactcaagatgatggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttgg 168  Q
    |||||| | |||||||| | ||| |||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||    
T  13270831 agatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtgg 13270930  T
Q  169 agttaatttggcatacacaggt 190  Q
    | ||||||||||||| ||||||    
T  13270931 acttaatttggcataaacaggt 13270952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 54483039 - 54483113
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggtta 83  Q
    ||||||||||||| || || |||||||||| |||| || ||||||||||| || || ||||||||| | ||||||    
T  54483039 ttggtagaggagtgtaggggtttattactaacagtctctttgcaggaatccgttactgatagatgggtgtggtta 54483113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 2821917 - 2821993
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttacc 85  Q
    ||||||||||||| || ||||||| ||||| |||| || ||||||||||| || || || |||||| | ||||||||    
T  2821917 ttggtagaggagtgtagggctttaatactaacagtctctttgcaggaatctgttactgacagatgggtgtggttacc 2821993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 11908977 - 11909168
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||||||||||| ||| |||||| | |||||||| | ||| ||||||||    
T  11908977 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgg 11909076  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     |||||  | ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||||    
T  11909077 gtattctatacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttc 11909168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 35541317 - 35541128
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||  |||||||||||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  35541317 aggaggagttggtagaggagtgtagggctttgttactaacagtttttttgcaggaatcagtgttagacagatggctctggttacctaatcatgatgatgg 35541218  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| |||||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  35541217 gtattctgttcgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggt 35541128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 6050871 - 6050682
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  6050871 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatgg 6050772  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  6050771 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggt 6050682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 51052698 - 51052557
Alignment:
Q  51 caggaatcagtgacagatagatggatttggttaccaactcaagatgatggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctc 150  Q
    ||||||||||||| ||| |||||| | |||||||| | ||| |||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||| |    
T  51052698 caggaatcagtgatagacagatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagcccc 51052599  T
Q  151 acttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    | ||||| || ||  |||| ||||||||||||| ||||||||    
T  51052598 agttacaccataatatggacttaatttggcataaacaggttc 51052557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 16917778 - 16917872
Alignment:
Q  98 tggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| | |||||||| || |||||| || ||||||||||| | || ||||   | ||||||||  |||||||||||||||||| ||||||||    
T  16917778 tggttatactgttcgtggtgcatatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttc 16917872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 105715 - 105904
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || |||||| |||||| ||||||| |||||||| ||||||  ||| |||||| | |||||||| | ||| ||||||||    
T  105715 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatgatgg 105814  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggt 190  Q
     ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||||||| ||||||    
T  105815 gtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggt 105904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 3520 - 3329
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    |||| |||||||||||||||| || ||||||||||||| ||||||| || ||||||||||||||||| |||||| ||||| |||| |  || ||||||||    
T  3520 aggaggagttggtagaggagtgtagggctttattactaacagtttctttacaggaatcagtgacagacagatggctttgggtacctaaccatgatgatgg 3421  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     || || || ||||||| |||||| ||||||||||||||| |||| ||  | ||||| || ||  |||||||||||||||||| ||||||||    
T  3420 gtactcagtacgtggagtctatgatatgctgacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttc 3329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 41207284 - 41207093
Alignment:
Q  1 aggaagagttggtagaggagtttatggctttattactatcagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaagatgatgg 100  Q
    ||||||||||||||||||||| || || ||||||| |  ||||||| ||||||||||||||| ||||||||||| | |||||||||  ||| |||| |||    
T  41207284 aggaagagttggtagaggagtgtagggttttattatttacagtttccttgcaggaatcagtggcagatagatggttgtggttaccagatcaggatggtgg 41207185  T
Q  101 ttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
     ||||| ||  ||||||  ||||||||||||||||| ||| | || ||||| ||||||| |||  |||||||||||||||||| ||||||||    
T  41207184 gtattcagtatgtggagtttatgacatgctgacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttc 41207093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 4552359 - 4552246
Alignment:
Q  79 ggttaccaactcaagatgatggttattccgttcgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttg 178  Q
    ||||||| | ||| |||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||| || ||||| || ||  |||| ||||||||    
T  4552359 ggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttg 4552260  T
Q  179 gcatacacaggttc 192  Q
    ||||| | ||||||    
T  4552259 gcataaataggttc 4552246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 40176928 - 40176879
Alignment:
Q  9 ttggtagaggagtttatggctttattactatcagtttcattgcaggaatc 58  Q
    ||||||||||||| || ||||||||||||| |||| || |||||||||||    
T  40176928 ttggtagaggagtgtagggctttattactaacagtctctttgcaggaatc 40176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 11187 - 11268
Alignment:
Q  111 cgtggagcctatgacatgctgacatcacagaagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttc 192  Q
    ||||||| |||||||||||||||||||||| ||||| | ||  |||| || ||  |||| ||||||||||||| ||||||||    
T  11187 cgtggagtctatgacatgctgacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttc 11268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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