View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_high_7 (Length: 526)
Name: NF20367_high_7
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Complemental strand, 2007986 - 2007560
Alignment:
| Q |
14 |
aatattattaaacaaatctaaccaatatttatatatcattatacattttaacaaaacttttttagtttaatataaatgtttccataaccaaagttttcta |
113 |
Q |
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| T |
2007986 |
aatattattaaacaaatctaaccaatatttatatatcattatacattttaacaaaacttttttagtttaatataaatgtttccataactaaagttctcta |
2007887 |
T |
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| Q |
114 |
tgaatacatacattttcctctccacattagaggtgtctactaacatggtgctaaataggtgaaacatacaccaatgcaaatgtgatctaaacactattaa |
213 |
Q |
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| T |
2007886 |
tgaatacataccttttcctctccacattagaggtgtctactaacatggtgctaaataggtgaaacgtacaccaatgcaaatgtgacctaaacactattaa |
2007787 |
T |
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| Q |
214 |
taaatataatttatgaattatttaatatttgtcttaaagattaagttggtaaagactaaatatgttgcctggatgtttttagagactagcagcttttata |
313 |
Q |
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| T |
2007786 |
tgaatataatttatgaattatttaatatttgtcttaaagattaagttggtaaagactaaatatgttgcctcgatgtttttagagactagcagcttgtata |
2007687 |
T |
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| Q |
314 |
nnnnnnnncaaggattaaattgaatgtgatttttgtagtgacgtccaaaatggatattcattttaatgtataataacatattgtttgaaatataagtaat |
413 |
Q |
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| T |
2007686 |
ttttttttcaaggattaaattgaatgtgatttttgtagtga---ccaaaatggatattcattttaatgtataataacatattgtttgaaatataagtaat |
2007590 |
T |
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| Q |
414 |
gtcta-taagaataagataacatattccct |
442 |
Q |
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| T |
2007589 |
gtctattaagaataagataacatattccct |
2007560 |
T |
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