View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_1 (Length: 676)

Name: NF20367_low_1
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_1
NF20367_low_1
[»] chr4 (1 HSPs)
chr4 (4-658)||(33971837-33972506)


Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 4 - 658
Target Start/End: Original strand, 33971837 - 33972506
Alignment:
Q  4 cacagaagcttgaaagttgaaactactgaatcattactcgtcgcattgcaaaaataattttctgggtcttgnnnnnnnctactaaagattcaaactttgc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||    
T  33971837 cacagaagcttgaaagttgaaactactgaatcattactcgtcgcattgcaaaaataattttctgggtcttgttattttctaataaagattcaaactttgc 33971936  T
Q  104 aaaagttttaaaatgggtcggnnnnnnnnttgagataggttgaactataagtggatggatttgtttaggtgtacaatnnnnnnnnnnnnnnnnn---taa 200  Q
    |||||||| ||||||||| ||        |||||||||||||||||||||||||||    ||||||||||||||||                     |||    
T  33971937 aaaagttt-aaaatgggttggaaaaaaaattgagataggttgaactataagtggat----ttgtttaggtgtacaagaagatgatgaagaagaagaataa 33972031  T
Q  201 gattggaaaatttcacgtgacacgtgtcatgcacgtgagtattgagttttggttttggtgttcattgaatttggaaagtgaaaagagaagagaaaatggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972032 gattggaaaatttcacgtgacacgtgtcatgcacgtgagtattgagttttggttttggtgttcattgaatttggaaagtgaaaagagaagagaaaatggt 33972131  T
Q  301 tatgggattgaaaatgatgatggtggtgaagagaatagtgaagcaataggtgtgaagatggaaaagggggattattgtaattgtattgttgccacagatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972132 tatgggattgaaaatgatgatggtggtgaagagaatagtgaagcaataggtgtgaagatggaaaagggggattattgtaattgtattgttgccacagatt 33972231  T
Q  401 tggctacatattgttcccccatttgactgaaggccaagaatgccgtaccaaaagaaattacaagtatataatagaaagaaaaattatgaggaaaataaag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972232 tggctacatattgttcccccatttgactgaaggccaagaatgccgtaccaaaagaaattacaagtatataatagaaagaaaaattatgaggaaaataaag 33972331  T
Q  501 ggtgattgtcatggtgtaatatgaaggcaagaatacaaaaactgaaaaacaaaactaataaagtttagggggcagttatcattgaattgaata------- 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  33972332 ggtgattgtcatggtgtaatatgaaggcaagaatacaaaaactgaaaaacaaaactaataaagtttagggggcagttatcattgaattgaataagtatta 33972431  T
Q  594 ----------agtatttattcattgagtggttatgaaataagatagtgatgtataaacaattaaatagaagatgg 658  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33972432 ttatgtgtatagtatttattcattgagtggttatgaaataagatagtgatgtataaacaattaaatagaagatgg 33972506  T

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