View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_11 (Length: 433)
Name: NF20367_low_11
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 345
Target Start/End: Original strand, 9045372 - 9045698
Alignment:
| Q |
18 |
catattcgtgttctctatgtagcttt--atccactctcttttccatgtgttatatat--acgtgttttgttaaatttacactccaactttattaatcaag |
113 |
Q |
| |
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|||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9045372 |
catattcgtgttatctatgcagcttttaatccactctcttttccatgtgttatatatgtacgtgttttgttaaatttacactccaactttatcaatcaag |
9045471 |
T |
|
| Q |
114 |
gtcgatgcatgtacatgtatggcatttactacctatctatttccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatcca |
213 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9045472 |
gtcgatgcatgtacatgtatggcatttactacc-----attcccactccactatctattcccaacatatctcttatatcttccatgtaaattaatatcca |
9045566 |
T |
|
| Q |
214 |
ccctatttcccatgaatatatgcattgcactacatgctctctatatatacgtgcgttgttctaagaacttcatttgcatttacccttcacactccacatc |
313 |
Q |
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|||||||| ||||||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
9045567 |
ccctattttccatgaatatatgcagtgcactacatgttctctatacatacgtgtgttgttctaagaacttcatttgcctttacccttcacacttcacatc |
9045666 |
T |
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| Q |
314 |
agtcacatatctactacaatcatggatgattg |
345 |
Q |
| |
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|||||||||||| ||||||||||| |||||| |
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| T |
9045667 |
tgtcacatatctattacaatcatggctgattg |
9045698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 125 - 429
Target Start/End: Original strand, 42935929 - 42936228
Alignment:
| Q |
125 |
tacatgtatggcatttactacctatctatttccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttccc |
224 |
Q |
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| T |
42935929 |
tacatgtatggcatttactacc-----attcccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttccc |
42936023 |
T |
|
| Q |
225 |
atgaatatatgcattgcactacatgctctctatatatacgtgcgttgttctaagaacttcatttgcatttacccttcacactccacatcagtcacatatc |
324 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |
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| T |
42936024 |
atgaatatatgcattgcactacatgttctctatatatacgcgcgttgttctaagaacttcatttgcatttgcccttcacacttcacatctgtcacatatc |
42936123 |
T |
|
| Q |
325 |
tactacaatcatggatgattgtggagctgaagcgctgcactctgaacattaccaattcacaacgattcaagtattggacataaattgtggagctgaaccc |
424 |
Q |
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|| | ||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
42936124 |
tattgcaatcatggctgattgtggagctgcagcgctgctctcttatcattaccaattcacatcgattcaagtattggacatatattgaggagctgaaccc |
42936223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 26084145 - 26084363
Alignment:
| Q |
18 |
catattcgtgttctctatgtagcttt--atccactctcttttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggt |
115 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084145 |
catattcgtgttctctatgcagcttttaatccactctcatttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggt |
26084244 |
T |
|
| Q |
116 |
cgatgcatgtacatgtatggcatttactacctatctatttccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccacc |
215 |
Q |
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||||||||||||||||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
26084245 |
cgatgcatgtacatgtatggcatttactatc-----gttcccactccactatctattcccaacatatctcttatatcttccatgtaaattaatatccatc |
26084339 |
T |
|
| Q |
216 |
ctatttcccatgaatatatgcatt |
239 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
26084340 |
ctatttcccatgaatatatgcatt |
26084363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 42935101 - 42935218
Alignment:
| Q |
18 |
catattcgtgttctctatgtagcttt--atccactctcttttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935101 |
catattcgtgttctctatgtagcttttaatccactctcttttccatgtgttatatatacgtgttttgttaaatttacactccaactttattaatcaaggt |
42935200 |
T |
|
| Q |
116 |
cgatgcatgtacatgtat |
133 |
Q |
| |
|
|||||||||||||||||| |
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| T |
42935201 |
cgatgcatgtacatgtat |
42935218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 293 - 421
Target Start/End: Original strand, 26084362 - 26084485
Alignment:
| Q |
293 |
ttacccttcacactccacatcagtcacatatctactacaatcatggatgattgtggagctgaagcgctgcactctgaacattaccaattcacaacgattc |
392 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||| ||||||||||| | ||||||||||||| || |||| |||| | |||||||||||||| |||| |
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| T |
26084362 |
ttactcttcacacttcacatctgtcacatatctattacaatcatggct-attgtggagctgacgcactgctctcttatcattaccaattcac----attc |
26084456 |
T |
|
| Q |
393 |
aagtattggacataaattgtggagctgaa |
421 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |
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| T |
26084457 |
aagtattggacatatattgaggagctgaa |
26084485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 80 - 367
Target Start/End: Original strand, 21762349 - 21762632
Alignment:
| Q |
80 |
ttgttaaatttacactccaa-ctttattaatcaaggtcgatgcatgtacatgtatggcatttactacctatctatttccactccactatctatttccaac |
178 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||| ||||||||||||| ||||| ||||||||||| ||| ||||||||||||||| ||||| |
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| T |
21762349 |
ttgttaaatttacactacaaactttattaattaaggccgatgcatgtacaggtatgacatttactaccattctt-----actccactatctattcccaac |
21762443 |
T |
|
| Q |
179 |
atatctcttatatcttccatgtaaattaatatccaccctatttcccatgaatatatgcattgcactacatgctctctatatatacgtgcgttgttctaag |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| ||||| |
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| T |
21762444 |
atatctcttatatcttccatgtaaattagtatccaccttatttcccaggcatatatgcattgcactacatgttctctatatatacgtgtgttgtgctaag |
21762543 |
T |
|
| Q |
279 |
aacttcatttgcatttacccttcacactccacatcagtcacatatctactacaatcatggatgattgtggagctgaagcgctgcactct |
367 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||| |||||||||||||| |||| |
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|
| T |
21762544 |
aacttcatttgcatttacccttcacacttcacatctgtcacatatctattacaatcatggctgattgtgcagctgaagcgctgctctct |
21762632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 338
Target Start/End: Original strand, 24258100 - 24258283
Alignment:
| Q |
156 |
ccactccactatctatttccaacatatctcttatatcttccatgtaaattaatatccaccctatttcccatgaatatatgcattgcactaca--tgctct |
253 |
Q |
| |
|
|||| ||| ||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||| |
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|
| T |
24258100 |
ccaccccattatatattcccaacatctctcttatatcttctatgtaaattaatatccaccctatttcccatgcatatatgcactgcactacattttctct |
24258199 |
T |
|
| Q |
254 |
ctatatatacgtgcgttgttctaagaacttcatttgcatttacccttcacactccacatcagtcacatatctactacaatcatgg |
338 |
Q |
| |
|
|| |||||| ||| ||||| |||||||||||||||||||| |||||||||| |||||| ||| ||||||| || |||||||| |
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|
| T |
24258200 |
ctctatatatgtgtgttgtgttaagaacttcatttgcatttttccttcacacttcacatc-ttcaaatatctattataatcatgg |
24258283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 30061789 - 30061847
Alignment:
| Q |
204 |
ttaatatccaccctatttcccatgaatatatgcattgcactacatgctctctatatata |
262 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||||||||| || |||| |||| |
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|
| T |
30061789 |
ttaatacccaccctatttcccatgaatatatacattacactacatgttcactatgtata |
30061847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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