View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_12 (Length: 432)
Name: NF20367_low_12
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 416
Target Start/End: Original strand, 41379029 - 41379414
Alignment:
| Q |
29 |
gacaaaaacattaatatgatagagaacgagtttaaactcacattgtatttttatttttcaacatcaattagtgcatgtttggtattgtgatgaatccatt |
128 |
Q |
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| T |
41379029 |
gacaaaaacattaatacgatagagaacaagtttaaactcacattatatttttatttttcaacatcaattagtgcatgtttggtattgtgatggattcatt |
41379128 |
T |
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| Q |
129 |
aaaatcacgataattcatcataattttgcagaagttaacgtgtgagtttctttgctctttaannnnnnnnnnagtgggtttggtatttttagtttattac |
228 |
Q |
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| T |
41379129 |
aaaatcacgataattcatcataattttacagaagttaacgtgtaagtttctttgctctttaatttttttt--agtgggtttggtatttttagtttattac |
41379226 |
T |
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| Q |
229 |
gtctccgttgtcgtggacatggtcattatgatctcaagagtgcgggttaaaagattttgactttgattatggtgagtacaaaatcaaaagctttaggtat |
328 |
Q |
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| T |
41379227 |
gtctccgttgtcgtggacatggtcattatgatctcaagagtgcgggttaaaagattttgactttgattatggtgagtacaaaatcaaaagctttaggtat |
41379326 |
T |
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| Q |
329 |
tgatgtaatgcaaaggtaagaatatgttaatgaacaaatcgatgtaatgcatatattgaaggtttcagattgtttaacgagtataaat |
416 |
Q |
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| T |
41379327 |
tgatgtaatgcaaaggtaagaacatgttaatgaacaaatcgatgtaatgcatatattgaaggtttcagattgtttaacgagtataaat |
41379414 |
T |
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