View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_13 (Length: 429)

Name: NF20367_low_13
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_13
NF20367_low_13
[»] chr8 (16 HSPs)
chr8 (203-412)||(36196236-36196442)
chr8 (1-170)||(36196475-36196644)
chr8 (203-412)||(36209368-36209565)
chr8 (1-170)||(36209598-36209768)
chr8 (205-411)||(36183981-36184179)
chr8 (8-166)||(36184218-36184376)
chr8 (1-166)||(36188158-36188326)
chr8 (203-291)||(36188033-36188121)
chr8 (10-137)||(36200418-36200545)
chr8 (220-320)||(36185468-36185568)
chr8 (218-280)||(36201749-36201811)
chr8 (371-412)||(36187738-36187779)
chr8 (220-316)||(36203113-36203209)
chr8 (211-280)||(36214245-36214316)
chr8 (265-360)||(36215577-36215673)
chr8 (304-364)||(36208659-36208720)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 203 - 412
Target Start/End: Complemental strand, 36196442 - 36196236
Alignment:
Q  203 atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat 302  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196442 atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat 36196343  T
Q  303 gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatgatgtcatttgatactatctcaactctttta 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  36196342 gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggtt---gatgtcatttgatactatctcaactctttta 36196246  T
Q  403 aacatcattc 412  Q
    ||||||||||    
T  36196245 aacatcattc 36196236  T

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Target: chr8; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36196644 - 36196475
Alignment:
Q  1 tatccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196644 tatccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggttt 36196545  T
Q  101 gaactatgtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgtagctg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36196544 gaactatgtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgtagctg 36196475  T

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Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 203 - 412
Target Start/End: Complemental strand, 36209565 - 36209368
Alignment:
Q  203 atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat 302  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |         ||||| |||||||||||||||| ||||||||||||    
T  36209565 atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattat---------tgtacaatgtttgaaatctcaaaattttaggagat 36209475  T
Q  303 gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatgatgtcatttgatactatctcaactctttta 402  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||   |||||||||||||||||||||||||||||||    
T  36209474 gttttgtcgatttttctacacagatccttggaatacaagttttataatttattagtctgtttggtt---gatgtcatttgatactatctcaactctttta 36209378  T

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Target: chr8; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36209768 - 36209598
Alignment:
Q  1 tatccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggttt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| ||| | |||| |||||||    
T  36209768 tatccattatggtaagatttcccttgtttcttgcagtaatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggttt 36209669  T
Q  101 gaactatgtttggaatggttgcttctgttaacaagtcact-tttgctaaatagtatagcatattgtagctg 170  Q
    ||||||||||||| ||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||    
T  36209668 gaactatgtttggtatggttggttctgttaacaagtcattgtttgctaaatagtataacatattgtagctg 36209598  T

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Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 205 - 411
Target Start/End: Complemental strand, 36184179 - 36183981
Alignment:
Q  205 attaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat 302  Q
    |||||||| ||| | ||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184179 attaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagat 36184080  T
Q  303 gttttgtcgatttttctacacagatccttgcaatacgagttttataatttagtagtctgtttggttgatgatgtcatttgatactatctcaactctttta 402  Q
    |||||||| ||||||||||||||||||||| |||||  |||       |||||||||| ||||||| ||    ||||||||| |||||| ||||| ||||    
T  36184079 gttttgtctatttttctacacagatccttggaatacaggtt------cttagtagtctatttggttaat----tcatttgatgctatcttaactcgttta 36183990  T

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Target: chr8; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 36184376 - 36184218
Alignment:
Q  8 tatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactat 107  Q
    |||||||||||||| | |||||||||||||||||||  ||| |||||||| ||||||||  |||||| |  ||| |||| ||||||||||||||||||||    
T  36184376 tatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactat 36184277  T
Q  108 gtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgta 166  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  36184276 gtttggtatggttggttctgttaacatgtcacttttgctaaatagtataacatattgta 36184218  T

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Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 36188326 - 36188158
Alignment:
Q  1 tatccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggttt 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||| ||| | ||||||||||||    
T  36188326 tatccattatggtaagatttccctt-tttcttgcagtaatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggttt 36188228  T
Q  101 gaactatgtttggaatggttgcttc---tgttaacaagtca-cttttgctaaatagtatagcatattgta 166  Q
    |||||| |||||| ||||||  |||   |||||||||||||   |||||||||||||||| |||||||||    
T  36188227 gaactaggtttggtatggtttgttctgttgttaacaagtcatggtttgctaaatagtataacatattgta 36188158  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 36188121 - 36188033
Alignment:
Q  203 atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaata 291  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  36188121 atattaacttggagtgcaaggctatggtttgacctgataaataattgtataattctgaagtcttttgtactatgtttgaaatctcaata 36188033  T

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Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 36200545 - 36200418
Alignment:
Q  10 tggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgt 109  Q
    |||||||||||| | ||||||||||| || |||| | ||||||||   |||| ||| ||||||||||||||| ||||||| ||||| |||||||||  ||    
T  36200545 tggtaagatttctcttgtttcttgcattattttcctatgtggttcagaaaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggt 36200446  T
Q  110 ttggaatggttgcttctgttaacaagtc 137  Q
    |||| ||||||  |||||||||||||||    
T  36200445 ttggtatggttagttctgttaacaagtc 36200418  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 320
Target Start/End: Complemental strand, 36185568 - 36185468
Alignment:
Q  220 aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttct 319  Q
    ||||||||| ||| |||| |||| ||||| | ||||||||   ||||||| |||||||||| ||  ||||||||||||| || ||||||| |||||||||    
T  36185568 aaggctatgtttttacctcataactaattatgtaattgtactagcttttgcactatgtttgcaaagtcaatattttaggggaggttttgttgatttttct 36185469  T
Q  320 a 320  Q
    |    
T  36185468 a 36185468  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 36201811 - 36201749
Alignment:
Q  218 gcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg 280  Q
    ||||||||||| ||| ||| ||||||||||| | |||||||| |||||||||||| |||||||    
T  36201811 gcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgtacgatgtttg 36201749  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 412
Target Start/End: Complemental strand, 36187779 - 36187738
Alignment:
Q  371 tgatgtcatttgatactatctcaactcttttaaacatcattc 412  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  36187779 tgatgtcatttgatactacctcaactcttttaaacaccattc 36187738  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 36203209 - 36203113
Alignment:
Q  220 aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttt 316  Q
    ||||||||| ||| | ||||||||||||||  |||||||| | ||||||||||||| ||||   | |||||||||  || ||||||||||| |||||    
T  36203209 aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttggcgtgtcaatatttatggggatgttttgtctatttt 36203113  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
Q  211 ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg 280  Q
    |||||| | ||| ||||| ||||||||||||||||||| | ||||||||| |  ||||||||||||||||||    
T  36214316 ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg 36214245  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 360
Target Start/End: Complemental strand, 36215673 - 36215577
Alignment:
Q  265 ttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacaga-tccttgcaatacgagttttataatttagtagtct 360  Q
    ||||||||||||||||  || ||||||||| | | || |||||||| ||||||||  | | | |||||| ||||| |||||||||||||||||||||    
T  36215673 ttttgtactatgtttgggatgtcaatatttcaagggaggttttgtccatttttctgtagaaattccttggaatacaagttttataatttagtagtct 36215577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 36208720 - 36208659
Alignment:
Q  304 ttttgtcgatttttctacacagat-ccttgcaatacgagttttataatttagtagtctgttt 364  Q
    |||||| |||||||||| ||| || |||||| |||| |||||||||||||||| ||||||||    
T  36208720 ttttgttgatttttctatacaaattccttgctatacaagttttataatttagtggtctgttt 36208659  T

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