View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_14 (Length: 425)

Name: NF20367_low_14
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_14
NF20367_low_14
[»] chr8 (9 HSPs)
chr8 (63-407)||(27498569-27498911)
chr8 (66-288)||(27496429-27496651)
chr8 (180-284)||(27544574-27544678)
chr8 (1-57)||(27499085-27499141)
chr8 (174-286)||(27505115-27505227)
chr8 (6-56)||(27504779-27504829)
chr8 (69-138)||(27544463-27544532)
chr8 (70-132)||(27505011-27505073)
chr8 (1-55)||(27544227-27544281)
[»] chr3 (6 HSPs)
chr3 (70-285)||(11438721-11438936)
chr3 (70-132)||(11317293-11317355)
chr3 (70-124)||(15461328-15461382)
chr3 (189-286)||(11317139-11317236)
chr3 (1-57)||(11317536-11317592)
chr3 (330-391)||(43488849-43488907)
[»] scaffold0071 (1 HSPs)
scaffold0071 (70-124)||(810-864)
[»] chr6 (1 HSPs)
chr6 (327-391)||(29320114-29320178)
[»] chr5 (1 HSPs)
chr5 (332-390)||(13421724-13421779)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 63 - 407
Target Start/End: Complemental strand, 27498911 - 27498569
Alignment:
Q  63 aagggcatggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggtcaacaagaccggaagtgtagcaaaaggtgttgaaaata 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  27498911 aagggcatgatcgatgatatattaaatttgtgtagttttgagaacttaagcaacttggaggtcaacaagaccgtaagagtagcaacaggtgttgaaaata 27498812  T
Q  163 aagcnnnnnnncgtcgtggccaagtcggagattggaaaaaccttctcacaactgaaatgattgagcaattaaacactatcaccgaaaataaattgggtaa 262  Q
    ||||       |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27498811 aagctttttttcgtcgtggccaagttggagattggaaaaaccttctcacagctgaaatgattaagcaattaaacactatcaccgaaaataaattgggtaa 27498712  T
Q  263 acatgggttgagtttttagatttttggagtgtttctttcaagtctaaaaataaaattgcggagattaagttttt-tagtgagagaaacttcaactaatta 361  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||   |||    
T  27498711 acatgggttgagtttttagatttttggagtgtttgtttcaagtctaagaataacattgcggagattaagtttttcaagtgagagaaacttcaac---tta 27498615  T
Q  362 tctttaagctttctttctccttcattcatctatgaggggcggtttt 407  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  27498614 tctttaagctttctttctccttcattcatcgatgaggggcggtttt 27498569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 66 - 288
Target Start/End: Complemental strand, 27496651 - 27496429
Alignment:
Q  66 ggcatggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggtcaacaagaccggaagtgtagcaaaaggtgttgaaaataaag 165  Q
    |||||||| |||||| |||||||||||||||||||||||||  || |||||||||| ||| | |||||  ||||  || ||   |||| |||||||||||    
T  27496651 ggcatggttgatgatttattaaatttgtgtagttttgagaatctgggcaacttggaagtcgataagacatgaagaatatcatctggtgatgaaaataaag 27496552  T
Q  166 cnnnnnnncgtcgtggccaagtcggagattggaaaaaccttctcacaactgaaatgattgagcaattaaacactatcaccgaaaataaattgggtaaaca 265  Q
    |       | |||||| ||||| |||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||| ||| ||||||   |||||    
T  27496551 cttttttccatcgtggacaagttggagattggaaaaatcttctcacaacagaaatgattgagctgttaaacactatcaccggaaacaaattgtccaaaca 27496452  T
Q  266 tgggttgagtttttagatttttg 288  Q
    |||||||||||| || |||||||    
T  27496451 tgggttgagtttctaaatttttg 27496429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 27544574 - 27544678
Alignment:
Q  180 ggccaagtcggagattggaaaaaccttctcacaactgaaatgattgagcaattaaacactatcaccgaaaataaattgggtaaacatgggttgagttttt 279  Q
    |||| ||| |||||||| |||||  ||||||||||||||||||||||||| || ||||||||||| |||| |||||||| || |||||||||||| ||||    
T  27544574 ggccgagttggagattgcaaaaatgttctcacaactgaaatgattgagcagttgaacactatcactgaaagtaaattggctacacatgggttgagatttt 27544673  T
Q  280 agatt 284  Q
    |||||    
T  27544674 agatt 27544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27499141 - 27499085
Alignment:
Q  1 cacagagtagaggagcacttccattagaagaggcttttgagagtttttgtagaggag 57  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27499141 cacagagtagaggaccacttccattagaagaggcttttgagagtttttgtagaggag 27499085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 27505115 - 27505227
Alignment:
Q  174 cgtcgtggccaagtcggagattggaaaaaccttctcacaactgaaatgattgagcaattaaacactatcaccgaaaataaattgggtaaacatgggttga 273  Q
    |||| |||| |||| |||||||||||||| |||||||||||| ||||| ||||||| |||||||   |   |||| | ||||| ||||||||||||||||    
T  27505115 cgtcttggcaaagttggagattggaaaaatcttctcacaactaaaatggttgagcagttaaacatagttgtcgaagagaaatttggtaaacatgggttga 27505214  T
Q  274 gtttttagatttt 286  Q
    |||||||||||||    
T  27505215 gtttttagatttt 27505227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 27504779 - 27504829
Alignment:
Q  6 agtagaggagcacttccattagaagaggcttttgagagtttttgtagagga 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27504779 agtagaggaacacttccattagaagaggcttttgagagtttttgtagagga 27504829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 27544463 - 27544532
Alignment:
Q  69 atggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggtcaacaagaccggaa 138  Q
    ||||| ||||||||||||||| | ||||||||||||||  ||||||||||||||||||| ||||| ||||    
T  27544463 atggttgatgatatattaaatctatgtagttttgagaaactgagcaacttggaggtcaataagacaggaa 27544532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 27505011 - 27505073
Alignment:
Q  70 tggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggtcaacaaga 132  Q
    |||| |||||||||||| |||||||||||||||||||  | |||||||||||| |||| ||||    
T  27505011 tggttgatgatatattacatttgtgtagttttgagaagcttagcaacttggagatcaataaga 27505073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27544227 - 27544281
Alignment:
Q  1 cacagagtagaggagcacttccattagaagaggcttttgagagtttttgtagagg 55  Q
    |||| ||||||||| ||||||||||| |||| ||||| |||||||||||||||||    
T  27544227 cacaaagtagaggaccacttccattacaagaagctttcgagagtttttgtagagg 27544281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 285
Target Start/End: Complemental strand, 11438936 - 11438721
Alignment:
Q  70 tggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggtcaacaagaccggaagtgtagcaaaaggtgttgaaaataaagcnnn 169  Q
    |||| ||||||||||||||||||||||||||||||||  | |||||||||||||| || ||||| || |  ||  ||   |||||||||||||||||       
T  11438936 tggttgatgatatattaaatttgtgtagttttgagaagcttagcaacttggaggttaataagactgggaaagtgtcatttggtgttgaaaataaagcttt 11438837  T
Q  170 nnnncgtcgtggccaagtcggagattggaaaaaccttctcacaactgaaatgattgagcaattaaacactatcaccgaaaataaattgggtaaacatggg 269  Q
        |||||||||||||| |||||| |  |||| ||||| |||||||||||||||||||||||||||||| | |  ||| | ||||||| |||||||||     
T  11438836 ttttcgtcgtggccaagttggagatggagaaaagcttctaacaactgaaatgattgagcaattaaacactgtaattgaagagaaattggttaaacatgga 11438737  T
Q  270 ttgagtttttagattt 285  Q
    || | |||||||||||    
T  11438736 tttaatttttagattt 11438721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 11317355 - 11317293
Alignment:
Q  70 tggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggtcaacaaga 132  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  11317355 tggttgatgatatattaaatttgtgtagttttgagaagttgagcaatttggaggtcaataaga 11317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 15461328 - 15461382
Alignment:
Q  70 tggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggt 124  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  15461328 tggttgatgatatattaaatttgtgtagttttgagaagctgagcaacttggaggt 15461382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 11317236 - 11317139
Alignment:
Q  189 ggagattggaaaaaccttctcacaactgaaatgattgagcaattaaacactatcaccgaaaataaattgggtaaacatgggttgagtttttagatttt 286  Q
    |||||||||||||| | |||||||||||||||| |||||||  ||||||| ||| | ||| | ||||| |  |||||||||||| |||||||||||||    
T  11317236 ggagattggaaaaatcatctcacaactgaaatggttgagcagataaacaccatcgctgaagagaaatttgtaaaacatgggttgtgtttttagatttt 11317139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11317592 - 11317536
Alignment:
Q  1 cacagagtagaggagcacttccattagaagaggcttttgagagtttttgtagaggag 57  Q
    |||| ||||||||| |||||||| || ||||||||||||||| ||||||||||||||    
T  11317592 cacaaagtagaggaacacttccactacaagaggcttttgagaatttttgtagaggag 11317536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 43488907 - 43488849
Alignment:
Q  330 agttttttagtgagagaaacttcaactaattatctttaagctttctttctccttcattcatc 391  Q
    ||||||||||||||||||||||||||   || ||| ||| ||||||||||||||||||||||    
T  43488907 agttttttagtgagagaaacttcaac---ttctctctaaactttctttctccttcattcatc 43488849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 864 - 810
Alignment:
Q  70 tggtcgatgatatattaaatttgtgtagttttgagaacttgagcaacttggaggt 124  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  864 tggttgatgatatattaaatttgtgtagttttgagaagctgagcaacttggaggt 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 29320178 - 29320114
Alignment:
Q  327 ttaagttttttagtgagagaaacttcaactaattatctttaagctttctttctccttcattcatc 391  Q
    |||||||||||| ||||||||||| |  | | || ||||||| ||||||||||||||| ||||||    
T  29320178 ttaagttttttaatgagagaaactcctccaacttctctttaaactttctttctccttcgttcatc 29320114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 13421724 - 13421779
Alignment:
Q  332 ttttttagtgagagaaacttcaactaattatctttaagctttctttctccttcattcat 390  Q
    |||| |||||||||||||||||||   || ||||||| |||||||||| ||||||||||    
T  13421724 ttttctagtgagagaaacttcaac---ttctctttaaactttctttcttcttcattcat 13421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University