View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_15 (Length: 423)
Name: NF20367_low_15
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26879960 - 26880182
Alignment:
| Q |
1 |
aacgcaaagatctagtaagtacgaagataaaacctgacatttgaatgtgatttaaaatataccagtaaaacaataaataacaaaatttcaaaggcggttt |
100 |
Q |
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| T |
26879960 |
aacgcaaagatctagtaagtacgaagataaaacttgacatttgaatgtgatttaaaatataccagtaaaacaataaataacaaaatttcaaaggcggttt |
26880059 |
T |
|
| Q |
101 |
caaatgtgcgtgacaatgcatgtgtgtagtatcatcttatcgctcagtgtcttttcttcctactcctacacagcggttcattcctttaaataaacccagc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26880060 |
caaatgtgcgtgacaatgcatgtgtgtagtatcatcttatcgctcagtgtcttttcttcctgctcctacacagcggttcattcctttaaataaacccagc |
26880159 |
T |
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| Q |
201 |
gtaaattgtataatatgtacaag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
26880160 |
gtaaattgtataatatgtacaag |
26880182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 219 - 407
Target Start/End: Original strand, 26880280 - 26880471
Alignment:
| Q |
219 |
acaagtcacattccagataactccatcaacatctatctctgatttaacaacggcatgatccttatttggagataatttatctgaatcaatttgtattatc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26880280 |
acaagtcacattccagataactccatcaacatctatctctgatttaacagcggcatgatccttatttggagataatttatctgaatcaatttgtattatc |
26880379 |
T |
|
| Q |
319 |
atccatcaagctaaagaagtagaacaa---atttcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaac |
407 |
Q |
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| T |
26880380 |
atccatcaagctaaagaagtagaacaaattatttcttctcgacattaaaccacttcaggactttacaacagataaaaaggcacaaaggaaac |
26880471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 40249819 - 40249897
Alignment:
| Q |
219 |
acaagtcacattccagataactccatcaacatctatctctgatttaacaacggcatgatccttatttggagataattta |
297 |
Q |
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| T |
40249819 |
acaagtcacattccagatacttccatcaacatctatctctgatttaacaacagcatgatccttatttggagataattta |
40249897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 15161003 - 15161043
Alignment:
| Q |
302 |
aatcaatttgtattatcatccatcaagctaaagaagtagaa |
342 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
15161003 |
aatcaatttatattatcatcaatcaagctaaagaagcagaa |
15161043 |
T |
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