View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_16 (Length: 423)

Name: NF20367_low_16
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_16
NF20367_low_16
[»] chr4 (17 HSPs)
chr4 (175-413)||(284993-285231)
chr4 (175-413)||(39977927-39978165)
chr4 (180-362)||(12576922-12577105)
chr4 (5-85)||(284821-284901)
chr4 (206-336)||(11560140-11560271)
chr4 (5-83)||(39977773-39977851)
chr4 (195-319)||(24182543-24182668)
chr4 (195-335)||(37516417-37516558)
chr4 (282-362)||(6554541-6554621)
chr4 (19-83)||(11793773-11793837)
chr4 (194-333)||(42756850-42756990)
chr4 (196-319)||(17450019-17450145)
chr4 (5-63)||(35648915-35648973)
chr4 (195-319)||(28474935-28475060)
chr4 (282-362)||(314323-314403)
chr4 (192-351)||(24180689-24180849)
chr4 (5-53)||(42729061-42729109)
[»] chr5 (3 HSPs)
chr5 (175-413)||(33009755-33009993)
chr5 (5-85)||(33010089-33010169)
chr5 (253-339)||(9048598-9048684)
[»] chr3 (6 HSPs)
chr3 (180-362)||(12743108-12743290)
chr3 (180-408)||(9611678-9611917)
chr3 (5-83)||(12743387-12743464)
chr3 (9-54)||(40057298-40057343)
chr3 (195-319)||(9262682-9262807)
chr3 (9-54)||(39183838-39183883)
[»] chr8 (16 HSPs)
chr8 (175-413)||(21585588-21585825)
chr8 (175-327)||(10899124-10899277)
chr8 (230-413)||(13758847-13759034)
chr8 (5-85)||(21585915-21585995)
chr8 (7-85)||(37363312-37363389)
chr8 (283-336)||(18431589-18431642)
chr8 (231-302)||(14374533-14374605)
chr8 (195-336)||(15276846-15276988)
chr8 (195-336)||(15457215-15457357)
chr8 (5-74)||(14374262-14374331)
chr8 (9-54)||(40886534-40886579)
chr8 (283-351)||(760676-760744)
chr8 (7-67)||(10901015-10901075)
chr8 (283-335)||(14715286-14715338)
chr8 (180-276)||(21588161-21588256)
chr8 (9-65)||(38291457-38291513)
[»] chr6 (7 HSPs)
chr6 (178-408)||(4852704-4852943)
chr6 (178-408)||(11554335-11554574)
chr6 (201-304)||(1601910-1602013)
chr6 (7-85)||(1601758-1601835)
chr6 (7-85)||(4852523-4852600)
chr6 (7-85)||(11554678-11554755)
chr6 (20-61)||(24359911-24359952)
[»] scaffold1933 (1 HSPs)
scaffold1933 (197-362)||(581-747)
[»] scaffold0159 (2 HSPs)
scaffold0159 (203-327)||(30609-30734)
scaffold0159 (5-85)||(30859-30938)
[»] chr2 (6 HSPs)
chr2 (203-327)||(5786236-5786361)
chr2 (5-85)||(5786486-5786565)
chr2 (361-408)||(41752925-41752972)
chr2 (224-362)||(45275904-45276043)
chr2 (9-54)||(34425241-34425286)
chr2 (20-65)||(38797244-38797289)
[»] scaffold0024 (1 HSPs)
scaffold0024 (206-333)||(46416-46544)
[»] chr1 (5 HSPs)
chr1 (198-351)||(31089554-31089708)
chr1 (194-336)||(16852802-16852945)
chr1 (9-54)||(7843881-7843926)
chr1 (5-85)||(43384793-43384873)
chr1 (185-313)||(49879022-49879150)
[»] scaffold0191 (1 HSPs)
scaffold0191 (196-319)||(5831-5955)
[»] scaffold0074 (1 HSPs)
scaffold0074 (207-312)||(30763-30869)
[»] scaffold0377 (1 HSPs)
scaffold0377 (223-362)||(12556-12698)
[»] chr7 (6 HSPs)
chr7 (283-362)||(17474671-17474750)
chr7 (283-362)||(17510155-17510234)
chr7 (283-362)||(17542980-17543059)
chr7 (283-362)||(17578464-17578543)
chr7 (282-362)||(42078962-42079044)
chr7 (5-65)||(24708887-24708945)
[»] scaffold0061 (1 HSPs)
scaffold0061 (202-303)||(43110-43212)
[»] scaffold0017 (1 HSPs)
scaffold0017 (202-303)||(155574-155676)
[»] scaffold0114 (1 HSPs)
scaffold0114 (282-362)||(37040-37120)
[»] scaffold0012 (1 HSPs)
scaffold0012 (283-335)||(95949-96001)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 175 - 413
Target Start/End: Original strand, 284993 - 285231
Alignment:
Q  175 catctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcac 274  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  284993 catctctctttgaaactgccaccaatccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagaatctcac 285092  T
Q  275 acttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagatacctaatgtctt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  285093 acttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgtaagtgagatacctaatgtctt 285192  T
Q  375 aaggttttggatcaaaatatggcgtcgatctcatctgtg 413  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  285193 aaggttttggatcaaaatatggcgtcgatctcatttgtg 285231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 175 - 413
Target Start/End: Original strand, 39977927 - 39978165
Alignment:
Q  175 catctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcac 274  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  39977927 catccctctttgaaactgccaccaacccaccttttttaccatgttgtgcctctgaccttattaggctatcacaccaagtcacaaatataaagagtctcac 39978026  T
Q  275 acttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgag---------atacc 365  Q
    ||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||||| |||| |||||| |||         ||||     
T  39978027 acttaaaaagagatgttaatgtgtcatgtgagag---------taggttggatgcaagagtagattttaagcaacgtgttagcgagataacccgtataca 39978117  T
Q  366 taatgtcttaaggttttggatcaaaatatggcgtcgatctcatctgtg 413  Q
    ||||||||||||||||||||||||||||||  |||| |||||| ||||    
T  39978118 taatgtcttaaggttttggatcaaaatatgatgtcggtctcatttgtg 39978165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 180 - 362
Target Start/End: Complemental strand, 12577105 - 12576922
Alignment:
Q  180 ctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacactta 279  Q
    |||||||||||   || |||||||| |||||||| | ||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  12577105 ctctttgaaacccccatcaacccactttttttacgatgttgtgcctctgatcttattaggctatcccactaagtcacaaatacaaagagtctcacactta 12577006  T
Q  280 aaa-agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    ||| || |||| ||||| |||||  | ||||||||||| || ||||||||||||||| ||| ||||||||||| ||||||||||    
T  12577005 aaagagcgatgataatgtgtcataggggagttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagat 12576922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 284821 - 284901
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  284821 aatattttggtagtataattatccataaatctccaacttcttcaacaaactcataatattaatatcaacttattattttcc 284901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 11560140 - 11560271
Alignment:
Q  206 ttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgttaatgcgtcatgtg 304  Q
    |||||||||| |||||||||||||| |||||   |||||||||||| ||||||||| |||||||| |||||||||   ||||||||||||| |||||| |    
T  11560140 ttttttaccatgttgtgcctctgactttatttttctatctcaccaaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatggg 11560239  T
Q  305 agagttaaacttctaggttggatgcaagagta 336  Q
     ||||||||||| ||  |||||||||||||||    
T  11560240 tgagttaaacttatacattggatgcaagagta 11560271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 39977773 - 39977851
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattatttt 83  Q
    |||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39977773 aatattttggtagtataattactcaaaaatctacaacttcttcaacaaacccataaaattaacatcaacttattatttt 39977851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 24182668 - 24182543
Alignment:
Q  195 accaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaa 293  Q
    |||||||||| ||||||| || |||||| |||||| |||||| || | ||||||||  ||| ||||||| |  ||||||||| ||| | ||| |||||||    
T  24182668 accaacccacattttttaacatgttgtgtctctgatcttatttggatctctcaccagatcagaaatacagaatgtctcacacataatagagatatgttaa 24182569  T
Q  294 tgcgtcatgtgagagttaaacttcta 319  Q
    || ||||||||  |||||||||||||    
T  24182568 tgtgtcatgtgtaagttaaacttcta 24182543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 335
Target Start/End: Complemental strand, 37516558 - 37516417
Alignment:
Q  195 accaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaa 293  Q
    |||||||||| |||||||||| | |||  ||||| | ||||  | ||||||||| || ||||||| |||  |||||| | | |||| | |||||||||||    
T  37516558 accaacccacattttttaccatgatgtttctctgcctttatctgactatctcacaaaatcacaaacacatggagtctaatatttaagagagagatgttaa 37516459  T
Q  294 tgcgtcatgtgagagttaaacttctaggttggatgcaagagt 335  Q
    ||  ||||||| ||||||||||||||  || |||||||||||    
T  37516458 tgtttcatgtgtgagttaaacttctatatttgatgcaagagt 37516417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 6554541 - 6554621
Alignment:
Q  282 aagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||||||||||| |||| ||| |||||||| |||||   |||||| ||||||||||||| || ||||| | ||||||||    
T  6554541 aagagatgttaatgtgtcaagtgtgagttaaaattctatagtggatggaagagtagattttgaataacatataagtgagat 6554621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 11793773 - 11793837
Alignment:
Q  19 ataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattatttt 83  Q
    ||||||||||| |||||||||||| || | ||||||||||||||||| |  ||||| ||||||||    
T  11793773 ataattatccaaaaatctccaactcctccgacaaacccataaaattactgacaactcattatttt 11793837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 42756990 - 42756850
Alignment:
Q  194 caccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgtta 292  Q
    ||||||| ||| |||||||||| ||||| ||||| | ||||||   |||||||||||  ||| | | ||  ||| ||||||||||||   ||||||||||    
T  42756990 caccaactcacattttttaccatgttgttcctcttatcttatttttctatctcaccatatcatagacacggagaatctcacacttaagggagagatgtta 42756891  T
Q  293 atgcgtcatgtgagagttaaacttctaggttggatgcaaga 333  Q
    ||| ||||| || |||| |||||||||  ||||||||||||    
T  42756890 atgtgtcatttgtgagtaaaacttctacattggatgcaaga 42756850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 17450019 - 17450145
Alignment:
Q  196 ccaacccacctttt--ttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaa-aagagatgtta 292  Q
    ||||||||| ||||  ||||||  |||||||| || ||||||| || ||| ||||||  ||| | ||||||||||| ||||  ||||| || | ||||||    
T  17450019 ccaacccacattttccttaccactttgtgcctatggccttatttggttatttcaccatatcatagatacaaagagtttcacgtttaaagaatatatgtta 17450118  T
Q  293 atgcgtcatgtgagagttaaacttcta 319  Q
    ||| |||||||| ||||||||||||||    
T  17450119 atgtgtcatgtgtgagttaaacttcta 17450145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 35648973 - 35648915
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaat 63  Q
    ||||||||||||| | |||| ||||| ||| | |||||||||||||||| |||||||||    
T  35648973 aatattttggtagcaaaattgtccatcaatattcaacttcttcaacaaatccataaaat 35648915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 28475060 - 28474935
Alignment:
Q  195 accaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaa 293  Q
    |||||||||| ||||||| || | | ||||||||| |||||| |||| ||||||||  ||| |||||   |  ||||||||| ||| | ||| ||||| |    
T  28475060 accaacccacattttttaacatggtatgcctctgatcttatttggctctctcaccagatcagaaatatggactgtctcacacataatagagatatgttga 28474961  T
Q  294 tgcgtcatgtgagagttaaacttcta 319  Q
    || |||||||| ||||||||||||||    
T  28474960 tgtgtcatgtgtgagttaaacttcta 28474935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 314323 - 314403
Alignment:
Q  282 aagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||||||||||| |||| | | |||||||| ||||| | |||||  ||||||||||||| || ||||| | ||||||||    
T  314323 aagagatgttaatgtgtcaagcgtgagttaaaattctatggtggatagaagagtagattttgaataacatataagtgagat 314403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 351
Target Start/End: Complemental strand, 24180849 - 24180689
Alignment:
Q  192 gtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaaaga-gatgt 290  Q
    ||||| |||||| ||||||||||| |||||| ||   |||||||| | |||| ||| ||| ||| | | || |||| ||||||||||| | ||| || ||    
T  24180849 gtcacaaacccatcttttttaccaggttgtgtcttcaaccttatttgcctatttcatcaaatcatagacaccaagattctcacacttatagagatgaagt 24180750  T
Q  291 taatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacat 351  Q
    ||||| | |||||| ||||||| ||| ||  || |||||||||||| || |||| ||||||    
T  24180749 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacat 24180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 42729109 - 42729061
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaa 53  Q
    |||||||| |||||||||||| |||  ||||||||| ||||||||||||    
T  42729109 aatattttagtagtataattacccaataatctccaatttcttcaacaaa 42729061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 175 - 413
Target Start/End: Complemental strand, 33009993 - 33009755
Alignment:
Q  175 catctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcac 274  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  33009993 catctctctttgaaactgccacccacccaccttttttaccaagttgtgcctctgaccttatcagactatctaaccaagtcacaaatacaaagagtctcac 33009894  T
Q  275 acttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagatacctaatgtctt 374  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||    
T  33009893 acttaaaaagagatgttaatgtgtcatgtgtgagttaaacttctaggttggatgcaggagtagattttaagcaacgtgttagtgagatacgtaatgtctt 33009794  T
Q  375 aaggttttggatcaaaatatggcgtcgatctcatctgtg 413  Q
    | ||||||||||||||||||| |||||||||||| ||||    
T  33009793 acggttttggatcaaaatatgccgtcgatctcatttgtg 33009755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 33010169 - 33010089
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  33010169 aatattttggtagtataattacccataaatctccaacttcttcaataaacccataaaattaacatcaacttattattttcc 33010089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 9048598 - 9048684
Alignment:
Q  253 tcacaaatacaaagagtctcacacttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagat 339  Q
    |||||||| |||||| ||||| ||||||  ||||||||||||| || || || ||||||||||||||  | |||||||| |||||||    
T  9048598 tcacaaatgcaaagaatctcatacttaaggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagat 9048684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 180 - 362
Target Start/End: Complemental strand, 12743290 - 12743108
Alignment:
Q  180 ctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacactta 279  Q
    |||||||||  || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  12743290 ctctttgaagttgccaccaacccaccttttttaccatgttgtgcctctgaccttattaggctatctcacaaagtcacaaatacaaagtgtctcacactta 12743191  T
Q  280 aaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  12743190 aaaagagatgttaatgtgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaagcaatatgttagcgagat 12743108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 9611917 - 9611678
Alignment:
Q  180 ctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacactta 279  Q
    |||||||||| |  ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  9611917 ctctttgaaattcccaccatcccaccttttttaccatgttgtgcctctgacgttattaggctatctcacaaagtcacaaatacaaagagtctcatactta 9611818  T
Q  280 aaaagaga--tgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgag---------atacctaa 368  Q
    | ||||||  |||||||| |||||||| || ||||||||||| ||||||||||| |||||||||||| ||| |||||||||||         ||||||||    
T  9611817 agaagagatgtgttaatgtgtcatgtgtgatttaaacttctacgttggatgcaatagtagattttaagcaaaatgttagtgagatgacccgtatacctaa 9611718  T
Q  369 tgtcttaaggttttggatcaaaatatggcgtcgatctcat 408  Q
    ||||||||||||||| |||||||||||| |||||| ||||    
T  9611717 tgtcttaaggttttgcatcaaaatatggtgtcgatttcat 9611678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 12743464 - 12743387
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattatttt 83  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  12743464 aatattttggtagtataattagcgagaaatctccaacttcttcaacaaacccat-aaattaacaccaacttattatttt 12743387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 40057298 - 40057343
Alignment:
Q  9 ttttggtagtataattatccataaatctccaacttcttcaacaaac 54  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  40057298 ttttggtaaaataattatccaaaaatctccaacttcttcaacaaac 40057343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 319
Target Start/End: Original strand, 9262682 - 9262807
Alignment:
Q  195 accaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaa 293  Q
    |||||||||| ||||||| || |||||| |||||| |||||| | || ||||||||  ||| ||||||  |  ||||||||| ||| | | | |||||||    
T  9262682 accaacccacattttttaacatgttgtgtctctgatcttatttgactctctcaccatatcagaaatacggattgtctcacacgtaacagaaatatgttaa 9262781  T
Q  294 tgcgtcatgtgagagttaaacttcta 319  Q
    || ||||||||  |||||||||||||    
T  9262782 tgtgtcatgtgtaagttaaacttcta 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 39183838 - 39183883
Alignment:
Q  9 ttttggtagtataattatccataaatctccaacttcttcaacaaac 54  Q
    ||||||||  |||||||| || ||||||||||||||||||||||||    
T  39183838 ttttggtaaaataattattcaaaaatctccaacttcttcaacaaac 39183883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 175 - 413
Target Start/End: Complemental strand, 21585825 - 21585588
Alignment:
Q  175 catctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcac 274  Q
    |||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  21585825 catccctctttgaaactgccaccaacccaccttttt-accatgttgtgcctctgaccttattaggctatcacaccaagtcacaaatataaagagtctcac 21585727  T
Q  275 acttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgag---------atacc 365  Q
    ||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||||| |||| |||||| |||         ||||     
T  21585726 acttaaaaagagatgttaatgtgtcatgtgagag---------taggttggatgcaagagtagattttaagcaacgtgttagcgagataacccgtataca 21585636  T
Q  366 taatgtcttaaggttttggatcaaaatatggcgtcgatctcatctgtg 413  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  21585635 taatgtcttaaggttttggatcaaaatatgacgtcgatctcatttgtg 21585588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 10899277 - 10899124
Alignment:
Q  175 catctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcac 274  Q
    |||||||||||||||| |  ||||||||| ||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||     
T  10899277 catctctctttgaaaccgctaccaacccatcttttttacgatgttgtgcctctgaacttattaggttatctcaccaagtcacaaatacaaagaatctcaa 10899178  T
Q  275 acttaaaa-agagatgttaatgcgtcatgtgagagttaaacttctaggttggat 327  Q
    ||| ||||  |||| ||||||| |||||||| ||||||||| |||| |||||||    
T  10899177 actgaaaagggagaagttaatgtgtcatgtgtgagttaaacatctacgttggat 10899124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 230 - 413
Target Start/End: Original strand, 13758847 - 13759034
Alignment:
Q  230 ccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaatgcgtcatgtgagagttaaacttctaggttggatg 328  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||||||||||  ||| ||| ||||||| ||      |||||||    
T  13758847 ccttattagg-tatctcaccaagtcacaaatacaaagagtctcatagttaaaagagagatgttaatgtatcaagtgtgagttaacct-----attggatg 13758940  T
Q  329 caagagtagattttaaacaacatgttagtgag---------atacctaatgtcttaaggttttggatcaaaatatggcgtcgatctcatctgtg 413  Q
    ||||||||| | ||||||||||| ||||||||         |||||||||||||||||||||||| ||||||| ||| ||| ||||||| ||||    
T  13758941 caagagtagttgttaaacaacatattagtgagatgacccgtatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttgtg 13759034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 21585995 - 21585915
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    ||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21585995 aatattttggtagtataattacctagatatctccaacttcttcaacaaacccataaaattaacatcaacttattattttcc 21585915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 37363389 - 37363312
Alignment:
Q  7 tattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    |||||| |||||||| ||| |||||| |||| |||| ||||||||||||||||||||||| | |||| |||||||||||    
T  37363389 tatttttgtagtatagttagccataa-tctcaaactccttcaacaaacccataaaattaacaacaacatattattttcc 37363312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 18431642 - 18431589
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagta 336  Q
    ||||||||||||| |||||||| ||||||||||||||  || ||||||||||||    
T  18431642 agagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagta 18431589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 14374533 - 14374605
Alignment:
Q  231 cttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgttaatgcgtcatg 302  Q
    |||||| | |||||||| ||  ||||||| |||||||||||||||||||| | | ||||||||||||||||||    
T  14374533 cttatttgcctatctcatcatatcacaaacacaaagagtctcacacttaagagaaagatgttaatgcgtcatg 14374605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 336
Target Start/End: Complemental strand, 15276988 - 15276846
Alignment:
Q  195 accaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaa 293  Q
    ||||||| || ||||||| || |||||| |||||| |||||| |||| ||||||||  ||| ||| ||| |  ||||||||  ||| | ||| |||||||    
T  15276988 accaaccaacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaacacagattgtctcacatgtaacagagatatgttaa 15276889  T
Q  294 tgcgtcatgtgagagttaaacttctaggttggatgcaagagta 336  Q
    || ||||||||  |||||||||||||  ||||| |||| ||||    
T  15276888 tgtgtcatgtgtaagttaaacttctacattggaagcaaaagta 15276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 336
Target Start/End: Complemental strand, 15457357 - 15457215
Alignment:
Q  195 accaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaa 293  Q
    ||||||| || ||||||| || |||||| |||||| |||||| |||| ||||||||  ||| ||| ||| |  ||||||||  ||| | ||| |||||||    
T  15457357 accaaccaacattttttaacatgttgtgtctctgatcttatttggctctctcaccagatcagaaacacagattgtctcacatgtaacagagatatgttaa 15457258  T
Q  294 tgcgtcatgtgagagttaaacttctaggttggatgcaagagta 336  Q
    || ||||||||  |||||||||||||  ||||| |||| ||||    
T  15457257 tgtgtcatgtgtaagttaaacttctacattggaagcaaaagta 15457215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 14374262 - 14374331
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaact 74  Q
    ||||||||||||| ||||||| |||  | | ||||||| ||||||||||  ||||||||||||| |||||    
T  14374262 aatattttggtagcataattacccaatattgtccaactccttcaacaaattcataaaattaatagcaact 14374331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 40886534 - 40886579
Alignment:
Q  9 ttttggtagtataattatccataaatctccaacttcttcaacaaac 54  Q
    ||||||||  ||||||||||| ||||||||| ||||||||||||||    
T  40886534 ttttggtaaaataattatccaaaaatctccatcttcttcaacaaac 40886579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 760676 - 760744
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacat 351  Q
    |||||||| ||||||||||||  ||||||||| ||||  || ||||||||| || | ||||||||||||    
T  760676 agagatgtgaatgcgtcatgtatgagttaaacatctacatttgatgcaagaatatactttaaacaacat 760744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 10901075 - 10901015
Alignment:
Q  7 tattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaat 67  Q
    |||||||||||  |||||| |||  ||| ||||||| ||||||||||| ||||||||||||    
T  10901075 tattttggtagcttaattacccaataatttccaactccttcaacaaactcataaaattaat 10901015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 14715286 - 14715338
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagt 335  Q
    |||||||||||||  ||||||| ||||||||||||||  || |||||||||||    
T  14715286 agagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaagagt 14715338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 21588256 - 21588161
Alignment:
Q  180 ctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacac 276  Q
    |||| ||||||| ||||||||| || |||||||||| ||||||||| ||| |||||| |  |||| || ||  ||||||||||| | ||||||||||    
T  21588256 ctctatgaaactatcaccaacc-acattttttaccatgttgtgcctttgagcttatttgattatcacatcatatcacaaatacatatagtctcacac 21588161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 38291457 - 38291513
Alignment:
Q  9 ttttggtagtataattatccataaatctccaacttcttcaacaaacccataaaatta 65  Q
    ||||||||  |||||||| ||||||| | |||||| |||||| ||||||||||||||    
T  38291457 ttttggtaaaataattattcataaatatgcaactttttcaaccaacccataaaatta 38291513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 178 - 408
Target Start/End: Original strand, 4852704 - 4852943
Alignment:
Q  178 ctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacact 277  Q
    |||||||| ||||||||| ||||||||||||| ||||| | |||||||| |||||||||||  ||||||||||||||||||||||||||||||||| | |    
T  4852704 ctctctttaaaactgtcatcaacccaccttttataccatgatgtgcctccgaccttattagt-tatctcaccaagtcacaaatacaaagagtctcaaagt 4852802  T
Q  278 taaaa-agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgaga---------taccta 367  Q
    ||||| ||||||||||||| |||||||| ||||||| ||||||  ||||||||| |||||| | ||||||||||| |||||||||         |||| |    
T  4852803 taaaagagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtaccga 4852902  T
Q  368 atgtcttaaggttttggatcaaaatatggcgtcgatctcat 408  Q
    |||||||||| |||||||||||||| ||| ||| |||||||    
T  4852903 atgtcttaagattttggatcaaaatgtggtgtcaatctcat 4852943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 178 - 408
Target Start/End: Complemental strand, 11554574 - 11554335
Alignment:
Q  178 ctctctttgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacact 277  Q
    |||||||| ||||||||| ||||||||||||| ||||| | ||| |||| |||||||||||  ||||||||||||||||||||||||||||||||| | |    
T  11554574 ctctctttaaaactgtcatcaacccaccttttataccatgatgttcctccgaccttattagt-tatctcaccaagtcacaaatacaaagagtctcaaagt 11554476  T
Q  278 taaaa-agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgaga---------taccta 367  Q
    ||||| ||||||||||||| |||||||| ||||||| ||||||  ||||||||| |||||| | ||||||||||| |||||||||         ||||||    
T  11554475 taaaagagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtaccta 11554376  T
Q  368 atgtcttaaggttttggatcaaaatatggcgtcgatctcat 408  Q
    ||||||||||||||||| ||||||| ||| ||| |||||||    
T  11554375 atgtcttaaggttttgggtcaaaatgtggtgtcaatctcat 11554335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 1601910 - 1602013
Alignment:
Q  201 ccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaatgcgtc 299  Q
    |||| |||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||    
T  1601910 ccactttttataccatgatgtgcctctgaccttattagg-tatctcaccaagtcacaaatacaaagagtctcacagttaaaagagagatgttaatgtgtc 1602008  T
Q  300 atgtg 304  Q
    |||||    
T  1602009 atgtg 1602013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 1601758 - 1601835
Alignment:
Q  7 tattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    |||||| |||||||| ||| |||||| |||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  1601758 tatttttgtagtatagttagccataa-tctcaaactccttcaacaaacccataaaattaacaacaacttattattttcc 1601835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 4852523 - 4852600
Alignment:
Q  7 tattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    |||||| |||||||| ||| |||||| |||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  4852523 tatttttgtagtatagttagccataa-tctcaaactccttcaacaaacccataaaattaacaacaacttattattttcc 4852600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 11554755 - 11554678
Alignment:
Q  7 tattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    |||||| |||||||| ||| |||||| |||| |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  11554755 tatttttgtagtatagttagccataa-tctcaaactccttcaacaaacccataaaattaacaacaacttattattttcc 11554678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 24359952 - 24359911
Alignment:
Q  20 taattatccataaatctccaacttcttcaacaaacccataaa 61  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  24359952 taattatccaaaaatctccaacttcttcaacaatctcataaa 24359911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1933 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1933
Description:

Target: scaffold1933; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 197 - 362
Target Start/End: Complemental strand, 747 - 581
Alignment:
Q  197 caacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaatg 295  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || |||| |||||    
T  747 caacccactttttttacgatgttgtgcctctgaccttattaggctatctcactaagtcacaaatacgaagagtctcacacttaaaagagtgatgataatg 648  T
Q  296 cgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
     |||||  | ||||||||||| || ||||||||||||||| ||| ||||||||||| ||||||||||    
T  647 tgtcataggggagttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagat 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 30734 - 30609
Alignment:
Q  203 accttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaaag-agatgttaatgcgtcat 301  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  |||||    
T  30734 accttttttaccatgttgtgcatctgaccttattagcctatctcaccaagtcacaaatacaaagaatctcacacttaaaaagcagatgttaatatgtcat 30635  T
Q  302 gtgagagttaaacttctaggttggat 327  Q
    ||  |||||||||||||| |||||||    
T  30634 gtatgagttaaacttctatgttggat 30609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 30938 - 30859
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    ||||||||||||||||| ||| |||  |||| |||||||||||||||||| ||||||| ||| | |||||| |||||||||    
T  30938 aatattttggtagtata-ttacccagtaatccccaacttcttcaacaaactcataaaactaacaacaacttgttattttcc 30859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 5786361 - 5786236
Alignment:
Q  203 accttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaaag-agatgttaatgcgtcat 301  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||  |||||    
T  5786361 accttttttaccatgttgtgcatctgaccttattagcctatctcaccaagtcacaaatacaaagaatctcacacttaaaaagcagatgttaatatgtcat 5786262  T
Q  302 gtgagagttaaacttctaggttggat 327  Q
    ||  |||||||||||||| |||||||    
T  5786261 gtatgagttaaacttctatgttggat 5786236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 5786565 - 5786486
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    ||||||||||||||||| ||| |||  |||| |||||||||||||||||| ||||||| ||| | |||||| |||||||||    
T  5786565 aatattttggtagtata-ttacccagtaatccccaacttcttcaacaaactcataaaactaacaacaacttgttattttcc 5786486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 361 - 408
Target Start/End: Complemental strand, 41752972 - 41752925
Alignment:
Q  361 atacctaatgtcttaaggttttggatcaaaatatggcgtcgatctcat 408  Q
    |||||||||||||||||||||||| ||||||| ||| ||| |||||||    
T  41752972 atacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcat 41752925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 362
Target Start/End: Original strand, 45275904 - 45276043
Alignment:
Q  224 ctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaa-aagagatgttaatgcgtcatgtgagagttaaacttctaggt 322  Q
    ||||||||||| |  ||||| ||||||  || |||||||  |||||||||||||||   ||||||| |||||| |||||||| || | |||  ||||  |    
T  45275904 ctctgaccttagttagctatttcaccatatctcaaataccgagagtctcacacttaggcaagagatattaatgtgtcatgtgtgaataaaatatctacat 45276003  T
Q  323 tggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    | ||||||||||||||  ||||||||| ||| ||||||||    
T  45276004 ttgatgcaagagtagacattaaacaacgtgtaagtgagat 45276043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 34425286 - 34425241
Alignment:
Q  9 ttttggtagtataattatccataaatctccaacttcttcaacaaac 54  Q
    ||||||||  |||||||| || ||||||||||||||||||||||||    
T  34425286 ttttggtaaaataattattcaaaaatctccaacttcttcaacaaac 34425241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 38797244 - 38797289
Alignment:
Q  20 taattatccataaatctccaacttcttcaacaaacccataaaatta 65  Q
    ||||||| || ||||||| |||| ||||||||||||||||||||||    
T  38797244 taattattcaaaaatctctaactccttcaacaaacccataaaatta 38797289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 333
Target Start/End: Complemental strand, 46544 - 46416
Alignment:
Q  206 ttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacactta-aaaagagatgttaatgcgtcatgtg 304  Q
    ||||||| || ||||||||||||| | |||| | |||||||||||| ||||||| ||| | |||||||||||||  ||| ||||||||||| || ||| |    
T  46544 ttttttatcatgttgtgcctctgatcatatttgtctatctcaccaaatcacaaacacataaagtctcacacttagcaaatagatgttaatgtgtaatgcg 46445  T
Q  305 agagttaaacttctaggttggatgcaaga 333  Q
     ||||||||||||||  ||||| ||||||    
T  46444 tgagttaaacttctacattggaagcaaga 46416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 351
Target Start/End: Complemental strand, 31089708 - 31089554
Alignment:
Q  198 aacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgttaatgc 296  Q
    ||||||| |||||||||  ||||| ||||| |||||||| | |||||||||||  ||||||| ||||| | ||||||||||||   ||| |||||||||     
T  31089708 aacccacattttttaccctgttgtacctctaaccttattcgactatctcaccagatcacaaacacaaaaaatctcacacttaagggagatatgttaatgt 31089609  T
Q  297 gtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacat 351  Q
    ||||| ||  ||||||| |||||  ||||||| ||||||| ||||| | ||||||    
T  31089608 gtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacat 31089554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 336
Target Start/End: Original strand, 16852802 - 16852945
Alignment:
Q  194 caccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgtta 292  Q
    ||||||||||| ||||||| || |||||| |||||| |||||| |||| ||||||||  ||| ||||||  |  ||||||||  ||| | ||| ||||||    
T  16852802 caccaacccacattttttaacatgttgtgtctctgatcttatttggctctctcaccatatcagaaatacggattgtctcacaagtaacagagatatgtta 16852901  T
Q  293 atgcgtcatgtgagagttaaacttctaggttggatgcaagagta 336  Q
    ||| ||||||||  |||||||||||||  ||||| |||| ||||    
T  16852902 atgtgtcatgtgtaagttaaacttctacattggaagcaaaagta 16852945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 7843926 - 7843881
Alignment:
Q  9 ttttggtagtataattatccataaatctccaacttcttcaacaaac 54  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  7843926 ttttggtaaaataattatccaaaaatctccaacttcttcaacaaac 7843881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 43384873 - 43384793
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaattaatatcaacttattattttcc 85  Q
    ||||||||||||||||| |||   |  ||||||||||| ||||||||||||||||||| ||| ||||  |||||| |||||    
T  43384873 aatattttggtagtatagttacagactaatctccaactccttcaacaaacccataaaactaacatcatgttattagtttcc 43384793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 313
Target Start/End: Original strand, 49879022 - 49879150
Alignment:
Q  185 tgaaactgtcaccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaa 283  Q
    |||||| | ||||||||||| ||||| |||| |||||||||||||||| ||| | ||||||||| |  ||| | ||||| ||||||| ||| ||||   |    
T  49879022 tgaaaccgccaccaacccacattttt-accatgttgtgcctctgacctcatttgactatctcactagatcagatatacagagagtcttacatttaaggga 49879120  T
Q  284 gagatgttaatgcgtcatgtgagagttaaa 313  Q
    ||||||||||||   |||||| ||||||||    
T  49879121 gagatgttaatgtaccatgtgtgagttaaa 49879150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 319
Target Start/End: Original strand, 5831 - 5955
Alignment:
Q  196 ccaacccaccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaaa-agagatgttaat 294  Q
    ||||||||| ||||||| || ||| ||||||||| |||||| |||| ||||||||| ||| ||||||  |  ||||||||| ||| | ||| ||||| ||    
T  5831 ccaacccacattttttaacatgttatgcctctgatcttatttggctctctcaccaaatcagaaatacggattgtctcacacataatagagatatgttgat 5930  T
Q  295 gcgtcatgtgagagttaaacttcta 319  Q
    | |||||||| ||||||||||||||    
T  5931 gtgtcatgtgtgagttaaacttcta 5955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 30763 - 30869
Alignment:
Q  207 tttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgttaatgcgtcatgtga 305  Q
    ||||||| | ||| ||||||||||||||||   |||||||||||| ||||| | |||||||||| || |||||| | |||||| |||||| ||||||||     
T  30763 tttttacgatgttctgcctctgaccttatttcactatctcaccaaatcacatacacaaagagtcccatacttaagagagagatattaatgtgtcatgtgt 30862  T
Q  306 gagttaa 312  Q
    |||||||    
T  30863 gagttaa 30869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 362
Target Start/End: Complemental strand, 12698 - 12556
Alignment:
Q  223 cctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaaa-aagagatgttaatgcgtcatgtgagagttaaacttctagg 321  Q
    |||||| ||||||| || ||| ||||||  ||| | || |||| ||||||||||||||  |||||||||||||| |||||||| |||||||| |||||      
T  12698 cctctggccttatttggttatttcaccatatcatagattcaaacagtctcacacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctata 12599  T
Q  322 --ttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
      || |||||||||||| || || | |||||||| ||||||||    
T  12598 cattagatgcaagagtaaatattgagcaacatgtaagtgagat 12556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 17474750 - 17474671
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||| |||||||||| |||| ||||||||||||||  || |||||||||||| || || |||||||| || |||||||    
T  17474750 agagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagat 17474671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 17510234 - 17510155
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||| |||||||||| |||| ||||||||||||||  || |||||||||||| || || |||||||| || |||||||    
T  17510234 agagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagat 17510155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 17542980 - 17543059
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||| |||||||||| |||| ||||||||||||||  || |||||||||||| || || |||||||| || |||||||    
T  17542980 agagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagat 17543059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 17578464 - 17578543
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||| |||||||||| |||| ||||||||||||||  || |||||||||||| || || |||||||| || |||||||    
T  17578464 agagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagat 17578543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 42079044 - 42078962
Alignment:
Q  282 aagagatgttaatgcgtcatgtgagagttaaacttctagg--ttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||||||||||| |||||||| ||||||||||||||    || ||||||||||||||| || | |||||||| ||||||||    
T  42079044 aagagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagat 42078962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 24708887 - 24708945
Alignment:
Q  5 aatattttggtagtataattatccataaatctccaacttcttcaacaaacccataaaatta 65  Q
    ||||||||||||| |||||||||||  ||||  ||||| |||||||||| |||||||||||    
T  24708887 aatattttggtagcataattatccaataatc--caactccttcaacaaatccataaaatta 24708945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 303
Target Start/End: Complemental strand, 43212 - 43110
Alignment:
Q  202 caccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgttaatgcgtca 300  Q
    ||||||||||| || ||||||||||| |||||||| |||||||||| ||| ||| | | ||  ||| ||||||||| ||   ||||||||||||| ||||    
T  43212 caccttttttatcatgttgtgcctctaaccttatttggctatctcatcaaatcatagaaacttagactctcacactcaagggagagatgttaatgtgtca 43113  T
Q  301 tgt 303  Q
    |||    
T  43112 tgt 43110  T

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Target: scaffold0017 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 155574 - 155676
Alignment:
Q  202 caccttttttaccaagttgtgcctctgaccttattaggctatctcaccaagtcacaaatacaaagagtctcacacttaa-aaagagatgttaatgcgtca 300  Q
    ||||||||||| || ||||||||||| |||||||| |||||||||| ||| ||| | | ||  ||| ||||||||| ||   ||||||||||||| ||||    
T  155574 caccttttttatcatgttgtgcctctaaccttatttggctatctcatcaaatcatagaaacttagactctcacactcaagggagagatgttaatgtgtca 155673  T
Q  301 tgt 303  Q
    |||    
T  155674 tgt 155676  T

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Target: scaffold0114 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 362
Target Start/End: Original strand, 37040 - 37120
Alignment:
Q  282 aagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatgttagtgagat 362  Q
    |||||||||||||| |||| ||| |||||||| |||||   |||||  ||||||||||||| || ||||| | ||||||||    
T  37040 aagagatgttaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagat 37120  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 96001 - 95949
Alignment:
Q  283 agagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagt 335  Q
    |||||||||||||  ||||||| ||||||||||||||  || |||||||||||    
T  96001 agagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaagagt 95949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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