View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_17 (Length: 420)
Name: NF20367_low_17
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 6188253 - 6187865
Alignment:
| Q |
13 |
aatatcatattaatgagatgttagttttttacaactatataaattctagacaattccgcaagttatgttacggggaatttggaaagggaaatatttgacg |
112 |
Q |
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| T |
6188253 |
aatatcatattaatgagatgttagttttttacaactata--aattctagacaattctgcaagttatgttacggggaatttggaaagggaaatatttgacg |
6188156 |
T |
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| Q |
113 |
gacacttataaaggtgtatacattttaagagagaaagaaataaagagaatgatctgattggaagagagaggtaaggtgaaattctagtgtttaaaaataa |
212 |
Q |
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| T |
6188155 |
gacacttgtaaaggtgtatacattttaagagagaaagagataaagagaatgatgtgattggaagagagaggtaaggtgaaattctagtgtttgaaaataa |
6188056 |
T |
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| Q |
213 |
ggg-ttacaagtatcattgttggtttaaaagcaacaacggattaaaaacttggattaaaataatttgtgatataaacgtagtgatttcatacaagatgaa |
311 |
Q |
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| T |
6188055 |
aggattacaagtagcattgttggtttgaaagcaacaacggattaaaaacttggattaaaataatttgtgatataaacgtagtgatttcatacgagatgaa |
6187956 |
T |
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| Q |
312 |
atatctaatcaaatgatttcttgaattagctaggttgagaagatgacgaagacttcatcacaataagggaatcaatgtaagggaatcatca |
402 |
Q |
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| T |
6187955 |
atatctaatcaaatgatttcttgaattaattaggttgagaagatgacgaagacttcatcacaataagagaatcacggtaagagaatcatca |
6187865 |
T |
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