View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_18 (Length: 412)

Name: NF20367_low_18
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_18
NF20367_low_18
[»] chr3 (18 HSPs)
chr3 (1-402)||(7032075-7032465)
chr3 (2-357)||(40930510-40930866)
chr3 (2-398)||(34332797-34333194)
chr3 (2-139)||(2364298-2364435)
chr3 (2-139)||(7312797-7312934)
chr3 (2-139)||(19920211-19920348)
chr3 (2-139)||(10323553-10323690)
chr3 (1-135)||(29523726-29523860)
chr3 (21-135)||(11203844-11203958)
chr3 (11-135)||(12342217-12342340)
chr3 (11-135)||(33496572-33496696)
chr3 (283-398)||(7312538-7312653)
chr3 (280-398)||(2364038-2364156)
chr3 (280-395)||(10323832-10323947)
chr3 (1-135)||(19890703-19890837)
chr3 (66-135)||(7031063-7031132)
chr3 (57-180)||(2755822-2755945)
chr3 (57-135)||(963200-963278)
[»] chr6 (15 HSPs)
chr6 (4-398)||(18651218-18651613)
chr6 (2-398)||(24767406-24767803)
chr6 (2-189)||(2553608-2553795)
chr6 (66-398)||(12733886-12734219)
chr6 (266-398)||(21167986-21168118)
chr6 (264-358)||(5734486-5734580)
chr6 (1-139)||(21630088-21630226)
chr6 (2-141)||(21168218-21168357)
chr6 (57-135)||(17579118-17579196)
chr6 (1-135)||(17606315-17606449)
chr6 (11-135)||(17573646-17573770)
chr6 (21-135)||(10577250-10577364)
chr6 (1-135)||(20883014-20883148)
chr6 (68-135)||(15958861-15958928)
chr6 (57-135)||(13937725-13937803)
[»] chr4 (19 HSPs)
chr4 (2-398)||(7403674-7404071)
chr4 (2-398)||(19755023-19755425)
chr4 (2-398)||(19784381-19784783)
chr4 (2-398)||(15739982-15740379)
chr4 (1-398)||(47685876-47686274)
chr4 (230-398)||(20788491-20788658)
chr4 (2-139)||(13270873-13271010)
chr4 (2-139)||(23642573-23642710)
chr4 (2-189)||(1828522-1828709)
chr4 (2-139)||(47418825-47418962)
chr4 (11-150)||(55725677-55725816)
chr4 (1-135)||(12697838-12697972)
chr4 (1-135)||(45472690-45472824)
chr4 (280-398)||(13271152-13271270)
chr4 (280-398)||(23642852-23642970)
chr4 (282-398)||(159954-160070)
chr4 (24-134)||(8361126-8361236)
chr4 (1-135)||(20002750-20002884)
chr4 (11-135)||(2822028-2822152)
[»] chr7 (8 HSPs)
chr7 (2-398)||(235419-235818)
chr7 (2-398)||(47876744-47877141)
chr7 (1-359)||(17720435-17720794)
chr7 (2-397)||(11277234-11277630)
chr7 (2-344)||(37919359-37919702)
chr7 (2-139)||(4938110-4938247)
chr7 (2-189)||(29967946-29968133)
chr7 (1-135)||(18532653-18532787)
[»] chr5 (26 HSPs)
chr5 (2-398)||(42927892-42928289)
chr5 (4-359)||(28535659-28536015)
chr5 (2-359)||(35983773-35984131)
chr5 (2-397)||(23238145-23238542)
chr5 (57-398)||(19255159-19255502)
chr5 (2-139)||(30732296-30732433)
chr5 (2-396)||(12824962-12825357)
chr5 (52-397)||(8227788-8228134)
chr5 (2-139)||(42513741-42513878)
chr5 (264-359)||(25824811-25824906)
chr5 (2-139)||(27117143-27117280)
chr5 (1-160)||(31641512-31641670)
chr5 (1-139)||(27767063-27767201)
chr5 (1-135)||(33385355-33385489)
chr5 (11-135)||(25857415-25857539)
chr5 (280-398)||(27117422-27117540)
chr5 (11-135)||(8300173-8300297)
chr5 (57-135)||(10776789-10776867)
chr5 (280-398)||(42513481-42513599)
chr5 (280-404)||(3418538-3418662)
chr5 (283-398)||(30732578-30732693)
chr5 (283-398)||(12820213-12820328)
chr5 (1-135)||(18359073-18359207)
chr5 (57-135)||(33169683-33169761)
chr5 (57-174)||(27795469-27795586)
chr5 (107-139)||(12820036-12820068)
[»] chr8 (20 HSPs)
chr8 (1-359)||(9922401-9922760)
chr8 (2-398)||(13396149-13396546)
chr8 (3-398)||(41665352-41665748)
chr8 (52-397)||(32266326-32266672)
chr8 (2-404)||(8299558-8299961)
chr8 (2-139)||(7924407-7924544)
chr8 (2-139)||(172124-172261)
chr8 (1-150)||(13200133-13200282)
chr8 (280-398)||(171864-171982)
chr8 (11-135)||(20824321-20824445)
chr8 (2-135)||(2170367-2170500)
chr8 (12-135)||(17699507-17699630)
chr8 (280-404)||(20496839-20496963)
chr8 (271-397)||(32567517-32567643)
chr8 (1-135)||(37434157-37434291)
chr8 (280-398)||(7924147-7924265)
chr8 (68-135)||(34137011-34137078)
chr8 (88-145)||(2529901-2529958)
chr8 (57-174)||(13879524-13879641)
chr8 (68-140)||(43270470-43270542)
[»] chr2 (6 HSPs)
chr2 (3-335)||(41206840-41207173)
chr2 (2-139)||(4552190-4552327)
chr2 (57-145)||(12645551-12645639)
chr2 (78-190)||(15917624-15917736)
chr2 (283-398)||(4551930-4552045)
chr2 (21-135)||(40176693-40176807)
[»] chr1 (12 HSPs)
chr1 (2-398)||(51052241-51052638)
chr1 (2-139)||(11909087-11909224)
chr1 (1-159)||(35541050-35541208)
chr1 (2-139)||(6050624-6050761)
chr1 (11-135)||(16917800-16917924)
chr1 (264-357)||(6259619-6259712)
chr1 (280-404)||(35540804-35540928)
chr1 (1-135)||(43388392-43388526)
chr1 (298-398)||(26059652-26059752)
chr1 (264-398)||(4842165-4842299)
chr1 (66-135)||(47623123-47623192)
chr1 (293-398)||(13352075-13352180)
[»] scaffold0472 (1 HSPs)
scaffold0472 (2-344)||(3067-3410)
[»] scaffold0369 (2 HSPs)
scaffold0369 (2-139)||(11187-11324)
scaffold0369 (264-362)||(11450-11548)
[»] scaffold0034 (2 HSPs)
scaffold0034 (2-139)||(105825-105962)
scaffold0034 (280-398)||(106104-106222)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 7032465 - 7032075
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||||||||||||||||||||||||||||||||| ||            |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7032465 tcgtggagtctatgacatgctgacatcacaggagcagcc------------taatttggagttggtttggcacaaacaggttcctctcaaaatttctatc 7032378  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7032377 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattgtggtcttttacctttggatgcgcggtcgtgtgtctcaggttgcg 7032278  T
Q  201 gggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactc 299  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7032277 gggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactc 7032178  T
Q  300 tcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttct 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  7032177 tcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatctttttttcacttgatttggttactttgtgtttct 7032078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 357
Target Start/End: Original strand, 40930510 - 40930866
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||||||||||||||||||||||| |   | | ||  ||  ||||||| ||||| || |||||||||||||||||||| |||||||    
T  40930510 cgtggagtctatgacatgctgacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatcc 40930609  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||||||||| |||||||| |||||||||||||||| ||| |||| || ||||| |||||||||||||| ||||||| |||||| ||  |||| ||    
T  40930610 ttgcttggcgacttttgagggattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgg 40930709  T
Q  202 ggccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  |||||||||||| | ||||||||| |||   ||  | ||||| || || |||||| |   ||||||||||||||| |||||||| ||||||||||||    
T  40930710 gaacgtcgaagatgtcaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggcttggagtggtaggggtcgactct 40930809  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagaggg 357  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||||| || |||||||||    
T  40930810 caatcaacttcggatcattttttgcaatttattaattatgcaggttgttcgagaggg 40930866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 2 - 398
Target Start/End: Original strand, 34332797 - 34333194
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||| ||||||||||||||||||||||||||| ||||   | | || |||| |||||||  ||||||| |||||||||||||||||||| |||||||    
T  34332797 cgtggagcctatgacatgctgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 34332896  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||| ||||||||| ||||| |||||||||||||| ||| |||| || |||||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  34332897 ttgcttggcaacttctgagagatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 34332996  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || ||||||||| |||   ||    ||||| || || |||||| |   ||||||||||||||| |||||||| ||||||||||||    
T  34332997 gaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcgactct 34333096  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||| |||||  || |||| ||||||||||||||||| ||||| || ||||||||||| || ||       |||||||||||||| |||||||||||    
T  34333097 caatcaacttcaaatcattttttgcaatttattaattacgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttc 34333194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 2364435 - 2364298
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  2364435 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatcc 2364336  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  2364335 ttgcttggcgactactgagggatcggttacctacaaaa 2364298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 7312934 - 7312797
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  7312934 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatcc 7312835  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  7312834 ttgcttggcgactaatgagggatcggttacctacaaaa 7312797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 19920211 - 19920348
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||| |||||||||||||| | ||||   | |  | | || |||| ||  ||||||| |||||||||||||||||||| |||||||    
T  19920211 cgtggagtctatgacatgttgacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatcc 19920310  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||||||||||||||||||||||||||||    
T  19920311 ttgcttggcgacttctgagggatcggttacctacaaaa 19920348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 10323553 - 10323690
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| |||||||||||||||||||| ||||   | |  | || | |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  10323553 cgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatcc 10323652  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  10323653 ttgcttggcgactactgagggatcggttacctacaaaa 10323690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 29523726 - 29523860
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||    
T  29523726 tcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatc 29523825  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||||||  |||||||||| ||||||||    
T  29523826 cttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 11203958 - 11203844
Alignment:
Q  21 tgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgag 120  Q
    ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||| ||||| ||||||||  ||||    
T  11203958 tgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgag 11203859  T
Q  121 ggatcggttacctac 135  Q
    |||||| ||||||||    
T  11203858 ggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 12342217 - 12342340
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||| | | ||||||||||||||||| ||||    
T  12342217 tatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttctt-taaaagtttctatccttgcttggc 12342315  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  12342316 gactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 33496696 - 33496572
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||| ||   || |||||||  ||||||| |||||||||||| | |||||||||||| |||| ||||    
T  33496696 tatgacttgttgacatcacaggaacaacctcatgttcatcaatatatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggc 33496597  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  33496596 gactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 7312653 - 7312538
Alignment:
Q  283 gtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgattt 382  Q
    ||||| || |||||||||| ||| ||||| ||| ||||   |||||||||| |||||||||| || ||||||||||| |||||       ||||||||||    
T  7312653 gtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttatttattatgcaggttgttcgagagggcgacgatctttcttgcacttgattt 7312554  T
Q  383 ggttactttgtgtttc 398  Q
    |||| |||||||||||    
T  7312553 ggttgctttgtgtttc 7312538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 2364156 - 2364038
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  2364156 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 2364057  T
Q  380 tttggttactttgtgtttc 398  Q
    |||| || |||||||||||    
T  2364056 tttgattgctttgtgtttc 2364038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 395
Target Start/End: Original strand, 10323832 - 10323947
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||||||| | ||  ||||||||||  | |||||||| || ||||||||||| || ||       |||||||    
T  10323832 ggagtggtaggtgtcgactctcaatcaacttctgatcactttgtgcaatttatacaatatgcaggttgttcgagagggcgacggtctttcttccacttga 10323931  T
Q  380 tttggttactttgtgt 395  Q
    ||||||| ||||||||    
T  10323932 tttggttgctttgtgt 10323947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 19890837 - 19890703
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || ||||||||| |||||||||||||  |||| | | ||| ||  ||| |||||||  | ||||| |||||||||||| | |||||||| |||    
T  19890837 tcgtggtgtatatgacatgttgacatcacaggaataacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttccatc 19890738  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||||| |||  |  |||||||||| ||||||||    
T  19890737 cttgcattgcggttgttgagggatcgattacctac 19890703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 7031063 - 7031132
Alignment:
Q  66 tttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||||| |||||||||||| | ||| ||||||||||||| ||||| ||  |||||||||| ||||||||    
T  7031063 tttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctac 7031132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 2755945 - 2755822
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 156  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| ||||||||||| ||| | ||| |||| | |||    
T  2755945 tggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctactaaataaaatttggcaagtcg 2755846  T
Q  157 tggtcttttacctttggatgcgcg 180  Q
    |||  | ||| ||||||| |||||    
T  2755845 tggggtcttatctttggaggcgcg 2755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 963200 - 963278
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| |||||||||||    
T  963200 tggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctac 963278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 4 - 398
Target Start/End: Original strand, 18651218 - 18651613
Alignment:
Q  4 tggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcctt 103  Q
    ||||||||||||||||||||||||||||||||| ||||   |   ||  ||| |||||||  ||||||| |||||||||||||||||||| |||||||||    
T  18651218 tggagtctatgacatgctgacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatcctt 18651317  T
Q  104 gcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgggg 203  Q
    || ||||||||||||||||||||||||||||||||||| ||| |||  || |||||  ||||||||||||||||||||| |||||||||  | ||||||     
T  18651318 gcttggcgacttctgagggatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcggga 18651417  T
Q  204 ccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctca 302  Q
    |||| |||||||| | ||| |||||||| ||||| || ||||| ||||| |||| | |   |||||| |||||||| |||||||| ||||||||||||||    
T  18651418 ccgttgaagatgtcaatcacttgttctttgtgtgtccaacttttagcgccttattgccattggtgcgagcatggctaggagtggtcggggtcgactctca 18651517  T
Q  303 atctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||| ||||| ||| |||||||||||||||||||||||||||| || ||||||||||| |||||       ||||||||||||||||||||||||||    
T  18651518 atcaacttcagatcatttgttgcaatttattaattatgcaggttgttcgagagggcgacgatctttttttcacttgatttggttactttgtgtttc 18651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 2 - 398
Target Start/End: Original strand, 24767406 - 24767803
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| |||    | | ||  ||| |||||||  ||| ||| |||||||||||| ||||||| |||||||    
T  24767406 cgtggagtctatgacatgctgacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatcc 24767505  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| || |||||||| ||||||||||||||||||||||| ||| |||| ||||||||  ||||||||||||| ||||||| |||||| |   |||||||    
T  24767506 ttgcttgacgacttcttagggatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgg 24767605  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || | ||||||| |||   || || ||||| || || |||||  |   |||||||||||||||||||||||| ||||||||||||    
T  24767606 gaacgttgaagatgttaataatttgtttttgtcttgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtaggggtcgactct 24767705  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||| |  ||       |||||||||||||| |||||||||||    
T  24767706 caatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacattcttttttccacttgatttggttgctttgtgtttc 24767803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 2553795 - 2553608
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| |||||||||||||| ||||| ||||   | |  | |||| |||||||  ||||||| |||||||||||||||||||| |||||||    
T  2553795 cgtggagtctatgatatgctgacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 2553696  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgt 189  Q
    |||| ||||||||| |||  |||||||||||||||||||| ||| |||| || |||||  ||||||||||||| |||| || ||||||    
T  2553695 ttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgt 2553608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 398
Target Start/End: Complemental strand, 12734219 - 12733886
Alignment:
Q  66 tttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtctttt 165  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||   ||| |||  |  |||||  || |    
T  12734219 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaacccgtggcattct 12734120  T
Q  166 acctttggatgcgcggtcgtgtgtctcaagttgcggggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcg 264  Q
    | || |||| | |||||  ||||| || || || |||   |||||||||| | |||||||||| |||   ||  | |||||  | || |||||| |   |    
T  12734119 atctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggagcattatggccgatg 12734020  T
Q  265 gtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgat 364  Q
    |||| ||  ||| | |||||||| ||||||||||||||||| ||||| ||| ||||  ||||||||||||||||||| || || ||||||||||| || |    
T  12734019 gtgcaggattggttaggagtggtaggggtcgactctcaatcaacttcagatcattttgtgcaatttattaattatgccggttgttcgagagggcgacggt 12733920  T
Q  365 cnnnnnnncacttgatttggttactttgtgtttc 398  Q
    |       |||||||||||||| |||||||||||    
T  12733919 ctttcttccacttgatttggttgctttgtgtttc 12733886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 266 - 398
Target Start/End: Complemental strand, 21168118 - 21167986
Alignment:
Q  266 tgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatc 365  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||| ||| |||| ||||||||||||||||| ||||| || ||||||||| | || ||    
T  21168118 tgcgagcatggctaggagtggtgggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggagacggtc 21168019  T
Q  366 nnnnnnncacttgatttggttactttgtgtttc 398  Q
           |||||||||||||| |||||||||||    
T  21168018 tttcttccacttgatttggttgctttgtgtttc 21167986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 358
Target Start/End: Original strand, 5734486 - 5734580
Alignment:
Q  264 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggc 358  Q
    |||||| |||||||| ||||||||  |||| ||||||||||| ||||| ||| ||||  |||||||||||||||||||||| || ||||||||||    
T  5734486 ggtgcgagcatggcttggagtggtaagggttgactctcaatcaacttcagatcattttgtgcaatttattaattatgcaggttgttcgagagggc 5734580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 21630088 - 21630226
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| || ||||||||| | ||||||||||||    
T  21630088 tcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttctatc 21630187  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    ||||  ||||||||  |||||||||| ||||||||||||    
T  21630188 cttgtttggcgactattgagggatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 21168357 - 21168218
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| ||| |||||||||||||||| ||||   | |  | |||| |||||||  ||||||| ||| |||||||||||||||| |||||||    
T  21168357 cgtggagtctatgatatgttgacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcc 21168258  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaa 141  Q
    | || ||| ||||| ||   ||||| ||||||||||||||    
T  21168257 tagcttggagacttttgcaagatcgattacctacaaaaaa 21168218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 17579118 - 17579196
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    |||||||  ||||||| |||||||||||| | ||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  17579118 tggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctac 17579196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 17606315 - 17606449
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||| | | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||    
T  17606315 tcgtggtgtatatgacttgttgacatcacaggaacaatctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatc 17606414  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||||||  |||||||||  ||||||||    
T  17606415 cttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 17573646 - 17573770
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||  ||  ||| |||||||  ||||||| |||||||||||| | |||| |||||||||||| ||||    
T  17573646 tatgacttgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggc 17573745  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  17573746 gactgttgagggatcgcttacctac 17573770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 10577250 - 10577364
Alignment:
Q  21 tgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgag 120  Q
    ||||||||||||| ||||| | | ||| ||  ||| | |||||  ||||||| |||||||||||| | ||||||| ||||||||| ||||||||  ||||    
T  10577250 tgacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgag 10577349  T
Q  121 ggatcggttacctac 135  Q
    |||||| ||||||||    
T  10577350 ggatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20883014 - 20883148
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || ||||||||| ||||||||||||| ||||| | | ||| ||  ||| |||||||  | ||||| ||| |||||||| | ||||||||||||    
T  20883014 tcgtggtgtatatgacatgttgacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttctatc 20883113  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||| ||  |||||||| | ||||||||    
T  20883114 cttgcttggcggctgttgagggattgtttacctac 20883148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 15958861 - 15958928
Alignment:
Q  68 tggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| |||||||||  ||||||||    
T  15958861 tggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctac 15958928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 13937803 - 13937725
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| |||||||||||    
T  13937803 tggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctac 13937725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 7404071 - 7403674
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | | ||  ||| || ||||  ||||||| ||||| |||| | ||||||| |||||||    
T  7404071 cgtggagtctatgacatgctgacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatcc 7403972  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| |||| || |||||  |||||| |||||| ||||||| |||||||||  | |||||    
T  7403971 ttgcttggcgacttctgagggatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgg 7403872  T
Q  202 ggccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| |||||||| | ||||||||| |||   || || ||||| || || |||||| |   |||| ||||||||||||||||||| ||||||||||||    
T  7403871 gaacgttgaagatgtcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggctcggagtggtaggggtcgactct 7403772  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||| |||||||||||    
T  7403771 caatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttcttttttccacttgatttggttgctttgtgtttc 7403674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 19755425 - 19755023
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||| ||||||||||||||||||||||| ||||| ||||   ||| || | || |||||||  ||||||| |||||||||||||||||||| |||||||    
T  19755425 cgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 19755326  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtg---gtcttttacctttggatgcgcggtcgtgtgtctcaagttg 198  Q
    |||| |||||||| ||||| |||||||||||||||||||| ||| |||| || ||||    | | ||||||||||| ||||||| |||||| ||  | ||    
T  19755325 ttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatg 19755226  T
Q  199 cggggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtgg--tgggggtcg 295  Q
     |||  ||| ||||||| || ||||||||| |||   ||    ||||| || || ||||||||   ||||||||||||||| |||||||  | |||||||    
T  19755225 tgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggtcaatggtgcgggcatggctaggagtggtataggggtcg 19755126  T
Q  296 actctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgt 395  Q
    | |||||||| ||||| ||| |||  ||||||||||||||||| ||||| || | |||| |||| || ||       |||||||||||||| ||||||||    
T  19755125 aatctcaatcaacttcagatcattgtttgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgt 19755026  T
Q  396 ttc 398  Q
    |||    
T  19755025 ttc 19755023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 2 - 398
Target Start/End: Original strand, 19784381 - 19784783
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||| ||||||||||||||||||||||| ||||| ||||   ||| || | || |||||||  ||||||| |||||||||||||||||||| |||||||    
T  19784381 cgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 19784480  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtg---gtcttttacctttggatgcgcggtcgtgtgtctcaagttg 198  Q
    |||| |||||||| ||||| |||||||||||||||||||| ||| |||| || ||||    | | ||||||||||| ||||||| |||||| ||  | ||    
T  19784481 ttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatg 19784580  T
Q  199 cggggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtgg--tgggggtcg 295  Q
     |||  ||| ||||||| || ||||||||| |||   ||    ||||| || || ||||||||   ||||||||||||||| |||||||  | |||||||    
T  19784581 tgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggtcaatggtgcgggcatggctaggagtggtataggggtcg 19784680  T
Q  296 actctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgt 395  Q
    | |||||||| ||||| ||| |||  ||||||||||||||||| ||||| || | |||| |||| || ||       |||||||||||||| ||||||||    
T  19784681 aatctcaatcaacttcagatcattgtttgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgt 19784780  T
Q  396 ttc 398  Q
    |||    
T  19784781 ttc 19784783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 15740379 - 15739982
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| ||| |||||||| ||||||| ||||   | |  | |||| |||||||  ||||||| |||||||||||||||||||| |||||||    
T  15740379 cgtggagtctatgatatgttgacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 15740280  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||| ||||| || | |||||||||||||||||||| ||| || | |  |||||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  15740279 ttgcttggagacttttgcgagatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgg 15740180  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |   ||  |||||| || ||||||||| |||   || |  |||||  | || |||||| |   |||||| |||||||| |||||||| |||||||| |||    
T  15740179 gaatgttaaagatgttaatcatttgtttttgtcttgtctaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattct 15740080  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||| ||||| ||| |||| ||||||||||||||||| ||||| || ||||||||| | || ||       |||||||||||||| |||||||||||    
T  15740079 caatcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggagacggtctttcttccacttgatttggttgctttgtgtttc 15739982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 47685876 - 47686274
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||||||||| ||||||||||||||||| ||||| |||    | |  | |||| |||| ||  |||| || |||||||||||||||||||| ||||||    
T  47685876 tcgtggagtctacgacatgctgacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatc 47685975  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcg 200  Q
    ||||| ||||||||| |||| |||||||||||||||||| | ||| |||| || |||||  ||||| || |||| | |||||  ||||| ||  | || |    
T  47685976 cttgcttggcgacttttgagagatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtg 47686075  T
Q  201 gggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactc 299  Q
    ||   |||||||||| | ||| |||||| |||   ||  | ||||| || || |||||| |   ||||||||  ||| | |||||||| |||||||||||    
T  47686076 ggaatgtcgaagatgtttctcgtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtgcgggattggttaggagtggtaggggtcgactc 47686175  T
Q  300 tcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    |||||| ||||| ||| ||||| |||||||||||||||||||||| || || |||||| | || ||       |||||||||||||| |||||||||||    
T  47686176 tcaatcaacttcagatcatttggtgcaatttattaattatgcaggttgttcaagagggtgacggtctttctttcacttgatttggttgctttgtgtttc 47686274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 398
Target Start/End: Original strand, 20788491 - 20788658
Alignment:
Q  230 tggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatt 329  Q
    ||||||| || ||||| ||||| |||||| |   |||||| |||||||| |||||||| ||||||||||||||||| ||||| ||| |||||||||||||    
T  20788491 tggtgtgtccaacttttagcgccttatggccattggtgcgagcatggctaggagtggtcggggtcgactctcaatcaacttcagatcatttgttgcaatt 20788590  T
Q  330 tattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||||||||| ||| || ||||||||||  |||||       ||||||||||||||||||||||||||    
T  20788591 tattaattatgtaggttgttcgagagggcaacgatc-ttttttcacttgatttggttactttgtgtttc 20788658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 13270873 - 13271010
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  13270873 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 13270972  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  13270973 ttgcttggcgactaatgagggatcggttacctacaaaa 13271010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 23642573 - 23642710
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  23642573 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 23642672  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  23642673 ttgcttggcgactaatgagggatcggttacctacaaaa 23642710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 1828522 - 1828709
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||| |||||| ||| |||||||||||||||| ||||   | | || |||| |||||||  ||||||| |||||||||||||||||||| |||||||    
T  1828522 cgtggagcctatgatatgttgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 1828621  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgt 189  Q
    |||| ||| ||||  || | ||| |||||||||||||||  ||| |||| || |||||  ||||||||||||| ||||||| ||||||    
T  1828622 ttgcttggagactattgcgagataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgt 1828709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 47418962 - 47418825
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| |||||||||||||||||||| ||||   | |  | || | |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  47418962 cgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatcc 47418863  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  47418862 ttgcttggcgactactgagggatcggttacctacaaaa 47418825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 55725677 - 55725816
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    ||||| ||| ||||||||||||| ||||| | | ||  ||  ||| |||||||  ||||||| ||||| |||||||| |||||||| |||||||| ||||    
T  55725677 tatgatatgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggc 55725776  T
Q  111 gacttctgagggatcggttacctacaaaaaacaatctggc 150  Q
    | ||  |||||||||| |||||||||||| ||||| ||||    
T  55725777 ggctattgagggatcgcttacctacaaaatacaatttggc 55725816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 12697972 - 12697838
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| || | ||  ||||||| |||||||||||| | ||||||||||||    
T  12697972 tcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaaaagtttctatc 12697873  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||||||  |||||||||| ||||||||    
T  12697872 cttgcttggcgactgttgagggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 45472690 - 45472824
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| | ||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||    
T  45472690 tcgtggtgtatatgacttgttgacatcacaggaaccacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatc 45472789  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||  ||||||||  |||||||||| ||||||||    
T  45472790 cttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 13271152 - 13271270
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  13271152 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 13271251  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  13271252 tttggttgctttgtgtttc 13271270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 23642852 - 23642970
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  23642852 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 23642951  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  23642952 tttggttgctttgtgtttc 23642970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 398
Target Start/End: Original strand, 159954 - 160070
Alignment:
Q  282 agtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatt 381  Q
    |||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||||    
T  159954 agtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatt 160053  T
Q  382 tggttactttgtgtttc 398  Q
    |||||  ||||||||||    
T  160054 tggttgttttgtgtttc 160070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 8361236 - 8361126
Alignment:
Q  24 catcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgaggga 123  Q
    |||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||  | ||||||||||||||||  |||||||| |||||| |    
T  8361236 catcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgactgctgaggaa 8361137  T
Q  124 tcggttaccta 134  Q
    ||| |||||||    
T  8361136 tcgtttaccta 8361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 20002884 - 20002750
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || ||||||||| |||||||||| || ||||| | | ||  ||  ||| |||||||  ||||||| |||||||||| | | ||||||||||||    
T  20002884 tcgtggtgtttatgacatgttgacatcacacgaacaacctcatgttaatcaaaatatggagttaatttggcataaacaggttcttttaaaagtttctatc 20002785  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
     |||| ||||| ||  |||||||||| ||||||||    
T  20002784 attgcttggcggctgttgagggatcgtttacctac 20002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 2822028 - 2822152
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || |||||||| |||| ||||| | ||||| ||  ||| |||||||  | |||||||||||||| ||||| ||||||||  ||| ||| ||||    
T  2822028 tatgacttgttgacatcataggaacaacctcatattcatcaaaatatggagttaatctggcacaaacaggtacctctaaaagtttcagtccatgcttggc 2822127  T
Q  111 gacttctgagggatcggttacctac 135  Q
    || |  |||||||||| ||||||||    
T  2822128 gattgttgagggatcgcttacctac 2822152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 2 - 398
Target Start/End: Original strand, 235419 - 235818
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||| |||||||||||||||| ||||   | | ||  ||| |||||||  ||||||| |||||||||| ||||||||| |||||||    
T  235419 cgtggagtctatgacatgttgacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatcc 235518  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaaca--atctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgc 199  Q
    |||| ||||||||||||||||||||||||||||||||||| |  || |||| || |||||  ||||||||||||| ||||||| |||||| ||  |||||    
T  235519 ttgcttggcgacttctgagggatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgc 235618  T
Q  200 ggggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgact 298  Q
    | |  ||| ||||||| || ||||||||| |||   ||  | ||||| || || |||||| |   |||||||||||||||||||||||| ||||||||||    
T  235619 gagaacgttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggctcggagtggtaggggtcgact 235718  T
Q  299 ctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||||| | ||| ||| |||| ||||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||| |||||||||||    
T  235719 ctcaatcaaattcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttctttcttccacttgatttggttgctttgtgtttc 235818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 47877141 - 47876744
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||| |||||||||||||||||||||||||| ||||   | | ||  |||  ||||||  ||||||| |||||||||||||||||||| |||||||    
T  47877141 cgtggagtttatgacatgctgacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatcc 47877042  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||||||||||||| |||| ||||||||||||||| ||| |||| || |||||  ||||||||||||| ||||||| |||||| ||  | |||||    
T  47877041 ttgcttggcgacttctgagagatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgg 47876942  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || ||||||||| |||   ||  | ||||| || || |||||      | ||||||||||||| |||||||| ||||||||||||    
T  47876941 gaacgttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgcattatgacaattgatgcgggcatggctaggagtggtaggggtcgactct 47876842  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
     |||| ||||| ||| |||| ||||||||||||||||||||||| || |||||||||||  | ||       |||||||||||||| |||||||||||    
T  47876841 taatcaacttcagattattttttgcaatttattaattatgcaggttgttcgagagggcgatggtctttcttccacttgatttggttgctttgtgtttc 47876744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 17720794 - 17720435
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||||| ||||||||||||||||||||||||||| || |   | | ||  || ||||||||  ||||||| | |||||||||||||||||||||||||    
T  17720794 tcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatc 17720695  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcg 200  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| |||| || |||||  |||||||| |||| ||||||  |||||| || ||||| |    
T  17720694 cttgcatggcgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtg 17720595  T
Q  201 gggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactc 299  Q
    ||   |  ||||||| || ||||||||| |||   ||  | ||||| || || |||||| |   |||||  |||||||| |||||||| ||||| |||||    
T  17720594 ggaatgaagaagatgttaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcaagcatggcttggagtggtaggggttgactc 17720495  T
Q  300 tcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 359  Q
    |||||| ||||| ||| ||||  |||||||||||||||||||||| || |||||||||||    
T  17720494 tcaatcaacttcagatcatttagtgcaatttattaattatgcaggatgttcgagagggcg 17720435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 397
Target Start/End: Original strand, 11277234 - 11277630
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| |||||||||||||||||||||||||   | |  | |||| |||||||  ||||||| |||||||||||||||||||| |||||||    
T  11277234 cgtggagtctatgatatgctgacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 11277333  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||||||||| |||| |||||||||||||| ||||| ||| |||| || |||||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  11277334 ttgcttggcgacttttgagagatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 11277433  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || ||||||||| | |   ||    | ||| || || |||||| |   |||||| |||||||| ||||||||||| ||||| |||    
T  11277434 gaacgttgaagatgttaatcatttgttttagtcttgtgtaaattttagtgcattatggccaatggtgcgagcatggctaggagtggtgggagtcgattct 11277533  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 397  Q
    || || ||||| ||| |||| ||||||||||||||||| ||||| || ||||||||||| || ||       ||||| |||||||| ||||||||||    
T  11277534 cattcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttgctttgtgttt 11277630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 37919702 - 37919359
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||| |||||||||||||||||||||||||| ||||   | | || | || || ||||  ||||| | |||||||||||||||||||| |||||||    
T  37919702 cgtggagtatatgacatgctgacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatcc 37919603  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||||||| ||||| ||| |||||||||||||||| ||| |||| || ||| |  ||||||||||||| ||||||| |||||| || ||||| ||    
T  37919602 ttgcttggcgactcctgagagattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgg 37919503  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || |||||| || |||   ||    ||||| || || |||||| |   ||||||||||||||| |||||||| |||||||| |||    
T  37919502 gaacgttgaagatgttaatcatttatttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcgaatct 37919403  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagg 344  Q
    ||||| ||||| ||| |||| ||||||||||||||||| |||||    
T  37919402 caatcaacttcagatcattttttgcaatttattaattacgcagg 37919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 4938110 - 4938247
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  4938110 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 4938209  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  4938210 ttgcttggcgactaatgagggatcggttacctacaaaa 4938247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 29968133 - 29967946
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||| |||||| |||||||||||||||||||||||||   | |  | || | |||||||  ||||||| |||||||||||||||||||| |||||||    
T  29968133 cgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatcc 29968034  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgt 189  Q
    |||| ||  ||||| |||| |||||||||||||| ||||  ||| |||| || | |||  ||||||||||||| ||||||| ||||||    
T  29968033 ttgcttgaggacttttgagagatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgt 29967946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 18532787 - 18532653
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || |||||||||| || ||||| | | ||| ||  ||| |||||||  | | ||| |||||||||||| | ||||||| ||||    
T  18532787 tcgtggtgtatatgacttgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatctcgcataaacaggttcctttaaaagtttatatc 18532688  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||||||  |||||||||| ||||||||    
T  18532687 cttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 42928289 - 42927892
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||||||||||| ||||| || ||||   | | ||| ||| |||||||  ||||| | |||||||||||||||||||| |||||||    
T  42928289 cgtggagtctatgacatgctgacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatcc 42928190  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||  ||||| |||||||||||||||||| |||||||||| ||| || | ||  ||||  ||||||| ||||| | ||||| |||||||||  | |||||    
T  42928189 ttgtttggcggcttctgagggatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgg 42928090  T
Q  202 ggccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| |||||||| | |||||||||||||   || || ||||| || || |||||  |   |||||||||||||||||||||||| ||||||||||||    
T  42928089 gaacgttgaagatgtcaatcatttgttcttgtcatgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtaggggtcgactct 42927990  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||| |||||||||||    
T  42927989 caatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttcatttttccacttgatttggttgctttgtgtttc 42927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 4 - 359
Target Start/End: Original strand, 28535659 - 28536015
Alignment:
Q  4 tggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcctt 103  Q
    ||||| ||||||||||||||||||||||||||| || |   | | ||  ||  |||||||  ||||||| | ||||||||||||||||||||||||||||    
T  28535659 tggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatcctt 28535758  T
Q  104 gcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgggg 203  Q
    || ||||||||||||||||||||||||||||||||||| ||| |||| || |||||  ||||||||||||| |||| |  |||||| ||  |||| |||     
T  28535759 gcttggcgacttctgagggatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtggga 28535858  T
Q  204 ccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctca 302  Q
      || ||||||||   ||||||||| |||   ||  | ||||| || || |||||| |   ||||||||||||||| |||||||| ||||| ||||||||    
T  28535859 atgtagaagatgtcgatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatggcttggagtggtaggggttgactctca 28535958  T
Q  303 atctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 359  Q
    ||| ||||| ||| ||||  ||||||||||||||||||| || || |||||||||||    
T  28535959 atcaacttcagatcattttgtgcaatttattaattatgctggttgttcgagagggcg 28536015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 2 - 359
Target Start/End: Original strand, 35983773 - 35984131
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||| ||||||||||||||||||||||||||| || |   | | ||  ||  |||||||  ||||||  | |||||||||||||||||| |||||||    
T  35983773 cgtggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatcc 35983872  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||| |||| || | ||   ||||||||||||| ||||||| |||||| |   |||| ||    
T  35983873 ttgcttggcgacttctgaggaatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgg 35983972  T
Q  202 ggccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |   || |||| ||| | ||||||||| |||   ||  | ||||| || || |||||| |   |||||||||||| || |||||||| ||||||||||||    
T  35983973 gaatgtagaagttgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatgacttggagtggtaggggtcgactct 35984072  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 359  Q
    ||||| ||||| ||| ||||  |||||||||||||||||||||| || |||||||||||    
T  35984073 caatcaacttcagatcattttatgcaatttattaattatgcaggttgttcgagagggcg 35984131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 2 - 397
Target Start/End: Complemental strand, 23238542 - 23238145
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| ||||| |||||||||||||||||||   | |  | |||| |||||||  ||||||| ||| ||||||||||||||||||||||||    
T  23238542 cgtggagtctatgatatgctaacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatcc 23238443  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||| ||||| |||| |||||||||||||| ||||  ||| |||| || |||||  ||||| ||||||| ||||||| |||||| ||  | || ||    
T  23238442 ttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgg 23238343  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggg-gtcgactc 299  Q
    |  ||| ||||||| || ||||||||| |||   ||    ||||| || || |||||| |   |||||| |||||||| |||||||||||| ||||| ||    
T  23238342 gaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggctaggagtggtggggagtcgattc 23238243  T
Q  300 tcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 397  Q
    ||| || || |||||| |||| ||||||||||||||||| ||||| || ||||||||||| || ||       ||||| |||||||| ||||||||||    
T  23238242 tcattcaacgtctgatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttgctttgtgttt 23238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 398
Target Start/End: Original strand, 19255159 - 19255502
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 156  Q
    |||||||  ||||||| |||||| || |||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||| ||| |||| ||| |    
T  19255159 tggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaaattg 19255258  T
Q  157 tggtcttttacctttggat-gcgcggtcgtgtgtctcaagttgcggggccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgcttt 254  Q
    |||  || | || |||||  ||||||| ||||||| |  | ||||||  ||| |||||||| | |||||||||||||   || || |||||  | || ||    
T  19255259 tggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgcctt 19255358  T
Q  255 atggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgaga 354  Q
    |||| |   |||||||||||||||||||||||| |||||||| |||||| | ||||| ||| |||| ||||||||||||||||| ||||| || ||||||    
T  19255359 atggacattggtgcgggcatggctcggagtggtaggggtcgattctcaaacaacttcagatcattttttgcaatttattaattacgcaggttgttcgaga 19255458  T
Q  355 gggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
      ||| |||||       |||||||||||||| |||||||||||    
T  19255459 ttgcgacgatcatttttccacttgatttggttgctttgtgtttc 19255502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 30732296 - 30732433
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||||||||||||||| ||||||     
T  30732296 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatct 30732395  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||||||||||||||||||||||||||||    
T  30732396 ttgcttggcgacttctgagggatcggttacctacaaaa 30732433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 12825357 - 12824962
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| ||||| |||||||||||||| | |||||    
T  12825357 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatcc 12825258  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||||||||||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  ||||| ||  | || ||    
T  12825257 ttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgg 12825158  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |   |||||||||| | |||||||||| |||   ||  | |||||  | || |||||| |   ||||||||  ||| | || ||||| || |||||||||    
T  12825157 gattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactct 12825058  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtt 396  Q
    | ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||| |||||||||    
T  12825057 cgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtt 12824962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 52 - 397
Target Start/End: Complemental strand, 8228134 - 8227788
Alignment:
Q  52 taatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcg 151  Q
    |||| |||||||  |||| || |||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||| ||||  ||| ||||     
T  8228134 taatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggca 8228035  T
Q  152 aatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcg 250  Q
    || ||||   ||||||||||||| ||||||| |||||| ||  | || | |  ||| ||||||| || ||||||||| |||   ||    ||||| || |    
T  8228034 aaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtg 8227935  T
Q  251 ctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctc 350  Q
    | |||||| |   |||||| |||||||| ||||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||| ||||| || ||    
T  8227934 cattatggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattacgcaggttgttc 8227835  T
Q  351 gagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 397  Q
    ||||||||| || ||       ||||| |||||||| ||||||||||    
T  8227834 gagagggcgtcggtctttcttccacttaatttggttgctttgtgttt 8227788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 42513878 - 42513741
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  42513878 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 42513779  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  42513778 ttgcttggcgactaatgagggatcggttacctacaaaa 42513741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 25824906 - 25824811
Alignment:
Q  264 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 359  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| || |||||||||||    
T  25824906 ggtgcgggcatggcttggagtggtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcg 25824811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 27117143 - 27117280
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||||||||||||||||||||   ||   | |  | |||| |||| ||  ||||||| |||||||||||||||||||| |||||||    
T  27117143 cgtggagtctatgacatgctgacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcc 27117242  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||||||||||| |||||||| ||||||    
T  27117243 ttgcttggcgacttctgagggaccggttacccacaaaa 27117280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31641670 - 31641512
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    ||||||||  |||||||||||||||||||||||||| || |   | | ||  ||  |||||||  ||||||| | |||||||||||| ||||||||||||    
T  31641670 tcgtggagcatatgacatgctgacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatc 31641572  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggt 160  Q
    ||||||||| |||| |||||||||||||||||||||||||| ||| |||| || ||||||    
T  31641571 cttgcatggagactactgagggatcggttacctacaaaaaataatttggcaaaccgtggt 31641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 27767201 - 27767063
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||| ||||    
T  27767201 tcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttatatc 27767102  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    ||||| ||||||||  |||||||||| ||||||||||||    
T  27767101 cttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 33385355 - 33385489
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||| | ||||| ||  ||| |||||||  ||||||| |||||||||||  | ||||||||||||    
T  33385355 tcgtggtgtatatgacttgttgacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatc 33385454  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||||||  |||||||||| ||||||||    
T  33385455 cttgcttggcgactgttgagggatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 25857415 - 25857539
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||||||| ||||    
T  25857415 tatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggc 25857514  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  25857515 gactgttgagggatcgcttacctac 25857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 27117422 - 27117540
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| ||||||||||||||||| ||||| ||| ||||  ||||||||||||||||||  || || ||||||||||| || ||       |||||||    
T  27117422 ggagtggtaggggtcgactctcaatcaacttcagatcattttgtgcaatttattaattatgtcggttgttcgagagggcgacggtctttcttccacttga 27117521  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  27117522 tttggttgctttgtgtttc 27117540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 8300173 - 8300297
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||||||  ||||    
T  8300173 tatgacctgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggc 8300272  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  8300273 gactgttgagggatcgcttacctac 8300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 10776867 - 10776789
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    |||||||  ||||||| |||||||||||  | ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  10776867 tggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 42513599 - 42513481
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  42513599 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 42513500  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  42513499 tttggttgctttgtgtttc 42513481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 3418662 - 3418538
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       || ||||    
T  3418662 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccatttga 3418563  T
Q  380 tttggttactttgtgtttctgtgct 404  Q
    ||||||| ||||||||||| |||||    
T  3418562 tttggttgctttgtgtttcggtgct 3418538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 30732578 - 30732693
Alignment:
Q  283 gtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgattt 382  Q
    ||||| || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       ||||||||||    
T  30732578 gtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgattt 30732677  T
Q  383 ggttactttgtgtttc 398  Q
    |||| |||||||||||    
T  30732678 ggttgctttgtgtttc 30732693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 12820213 - 12820328
Alignment:
Q  283 gtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgattt 382  Q
    ||||| || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       || |||||||    
T  12820213 gtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccatttgattt 12820312  T
Q  383 ggttactttgtgtttc 398  Q
    |||| |||||||||||    
T  12820313 ggttgctttgtgtttc 12820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 18359073 - 18359207
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || ||||||||| ||||||||||||| ||||| | | ||| ||  ||| |||||||  | | ||| |||||||||||| | |||||||| |||    
T  18359073 tcgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttcaatc 18359172  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| |||||  |  |||||||||| ||||||||    
T  18359173 cttgcttggcggttgttgagggatcgtttacctac 18359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 33169761 - 33169683
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| |||||||||||    
T  33169761 tggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctac 33169683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 27795586 - 27795469
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 156  Q
    ||||||| || |||||||||||||| |||||||||||| |  || |||| |||||  |  |||||||||| || ||||| |||  |||| |||| |||||    
T  27795586 tggagttagtctggcacaaacaggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaaatcg 27795487  T
Q  157 tggtcttttacctttgga 174  Q
    |||  ||||||| |||||    
T  27795486 tggcattttaccgttgga 27795469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 12820036 - 12820068
Alignment:
Q  107 tggcgacttctgagggatcggttacctacaaaa 139  Q
    ||||||||| |||||||||||||||||||||||    
T  12820036 tggcgacttatgagggatcggttacctacaaaa 12820068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 9922760 - 9922401
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||||| ||||||||||||||||||||||||||| || |   | | ||  || ||||||||  ||||||| | |||||||||||||||||||||||||    
T  9922760 tcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatc 9922661  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcg 200  Q
    |||||||| |||||||||||||||||||||||||||||| | ||| |||| || |||||  |||||||| |||| ||||||  |||||| ||  |||| |    
T  9922660 cttgcatgacgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtg 9922561  T
Q  201 gggccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactc 299  Q
    ||   || |||||||| | ||||||||| |||   ||  | ||||| || || |||||| |   |||||| |||||||| |||||||| ||||| |||||    
T  9922560 ggaatgtagaagatgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcgagcatggcttggagtggtaggggttgactc 9922461  T
Q  300 tcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 359  Q
    |||||| ||||| ||| ||||  |||||||||||||||||||||| || |||||||||||    
T  9922460 tcaatcaacttcagatcatttagtgcaatttattaattatgcaggatgttcgagagggcg 9922401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 13396546 - 13396149
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||| ||||||||||||||||||||||||||||| ||||   | | || | || |||||||  ||||||| ||||| |||||||||||||| |||||||    
T  13396546 cgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatcc 13396447  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||||||| ||||| |||||||||||||||||||| ||| |||| || |||||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  13396446 ttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 13396347  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || ||||||||| |||   ||    ||||| || || |||||| |   ||||||||||||||| |||||||| |||||||| |||    
T  13396346 gaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcgaatct 13396247  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||||| ||||| ||| |||   |||||||||||||||| ||||| || | |||| |||| || ||       |||||||||||||| |||||||||||    
T  13396246 caatcaacttcagatcattgtctgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgtttc 13396149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 41665352 - 41665748
Alignment:
Q  3 gtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcct 102  Q
    |||| ||||||||||||||||||||||||||||| ||||   | | || | || |||||||  ||||||| |||||||||||||||||||| ||||||||    
T  41665352 gtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatcct 41665451  T
Q  103 tgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggg 202  Q
    ||| |||||| | || || |||| ||||||||||||||| ||| |||| || | ||   ||||||||||||| ||||||| |||||| ||  | || |||    
T  41665452 tgcttggcgattcctaagagatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtggg 41665551  T
Q  203 gccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctc 301  Q
      ||| ||||||| || ||||||||| |||   ||    ||||| || || |||||| |   ||||||||||||||| |||||||| ||||| || ||||    
T  41665552 aacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggttgaatctc 41665651  T
Q  302 aatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    |||| ||||| ||| |||   |||||||||||||||| ||||| || | |||| |||| |||||       |||||||||||||| |||||||||||    
T  41665652 aatcaacttcagatcattgtctgcaatttattaattacgcaggttgtttgagaaggcgacgatctttcttccacttgatttggttgctttgtgtttc 41665748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 52 - 397
Target Start/End: Complemental strand, 32266672 - 32266326
Alignment:
Q  52 taatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcg 151  Q
    ||||||||||||  ||||||| |||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||| ||||  ||| ||||     
T  32266672 taatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggca 32266573  T
Q  152 aatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcg 250  Q
    || |||||  ||||||||||||| ||||||| |||||| ||  | || |||  ||| ||||||| || ||||||||| |||   ||    ||||| || |    
T  32266572 aaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtg 32266473  T
Q  251 ctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctc 350  Q
    | || ||| |   |||||| |||||||| ||||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||| ||||| || ||    
T  32266472 cattgtggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattacgcaggttgttc 32266373  T
Q  351 gagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 397  Q
    ||||||||| || ||       ||||| |||||||| ||||||||||    
T  32266372 gagagggcgtcggtctttcttccacttaatttggttgctttgtgttt 32266326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 404
Target Start/End: Complemental strand, 8299961 - 8299558
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||| | ||||   | |  | ||||||||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  8299961 cgtggagtctatgacatgctgacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatcc 8299862  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||||||| ||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | ||| |  |||||  |  | || ||    
T  8299861 ttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgg 8299762  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |   |||||||||| |||||||||||| |||   ||  | |||||  | || |||||| |   |||||||   ||| | |||||||| || |||||||||    
T  8299761 gattgtcgaagatgttactcatttgtttttgtcctgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactct 8299662  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttctg 400  Q
    ||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||||||||| ||||||||||| |    
T  8299661 caatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcgg 8299562  T
Q  401 tgct 404  Q
    ||||    
T  8299561 tgct 8299558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 7924544 - 7924407
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  7924544 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 7924445  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  7924444 ttgcttggcgactaatgagggatcggttacctacaaaa 7924407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 172261 - 172124
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||||||||||||||||||||   ||   | |  | |||  |||| ||  ||||||| |||||||||||||||||||| |||||||    
T  172261 cgtggagtctatgacatgctgacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatcc 172162  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||||||||||| |||||||| ||||||    
T  172161 ttgcttggcgacttctgagggaccggttacccacaaaa 172124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13200282 - 13200133
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || ||||| ||| ||||||||||||| ||||| | | ||| ||  ||| ||||||| |||||||| |||||||||||||| |||||||| |||    
T  13200282 tcgtggtgtgtatgatatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttcaatc 13200183  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggc 150  Q
    ||||| ||||  ||  |||||||||| |||||||||||| ||||| ||||    
T  13200182 cttgcttggcagctattgagggatcgtttacctacaaaatacaatttggc 13200133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 171982 - 171864
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| ||||||||||||||||| ||||| ||| ||||  ||||||||||||||||||| || || ||||||||||| || ||       |||||||    
T  171982 ggagtggtaggggtcgactctcaatcaacttcagataattttgtgcaatttattaattatgccggttgttcgagagggcgacggtctttcttccacttga 171883  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  171882 tttggttgctttgtgtttc 171864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 20824445 - 20824321
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||||||| ||||    
T  20824445 tatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggc 20824346  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  20824345 gactgttgagggatcgcttacctac 20824321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 2170500 - 2170367
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||| || ||||||||| ||||||||||||| ||||| | | ||| ||  ||| |||||||  | ||||| |||||||||||| | |||||||||||||    
T  2170500 cgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatcc 2170401  T
Q  102 ttgcatggcgacttctgagggatcggttacctac 135  Q
    |||| |||||||   |||||||||| ||||||||    
T  2170400 ttgcttggcgaccgttgagggatcgtttacctac 2170367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 17699630 - 17699507
Alignment:
Q  12 atgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcg 111  Q
    ||||| || |||||||||| || ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||  | ||||||||||||||||| |||||    
T  17699630 atgacttgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcg 17699531  T
Q  112 acttctgagggatcggttacctac 135  Q
    ||| ||||||||||| ||||||||    
T  17699530 actgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 20496963 - 20496839
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  20496963 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 20496864  T
Q  380 tttggttactttgtgtttctgtgct 404  Q
    ||||||| ||||||||||| |||||    
T  20496863 tttggttgctttgtgtttcggtgct 20496839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 32567517 - 32567643
Alignment:
Q  271 gcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnn 370  Q
    |||||||| ||||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||||||||| || || |||||||| || ||         
T  32567517 gcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattatgcaggttgttcaagagggcgtcggtctttct 32567616  T
Q  371 nncacttgatttggttactttgtgttt 397  Q
      ||||| |||||||| ||||||||||    
T  32567617 tccacttaatttggttgctttgtgttt 32567643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 37434291 - 37434157
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| ||||| |||||| | ||||| |||||     
T  37434291 tcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctctatt 37434192  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| ||||||||  |||||||||| ||||||||    
T  37434191 cttgcttggcgactgttgagggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 398
Target Start/End: Complemental strand, 7924265 - 7924147
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||  || ||       |||||||    
T  7924265 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcaacggtctttcttccacttga 7924166  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  7924165 tttggttgctttgtgtttc 7924147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 34137011 - 34137078
Alignment:
Q  68 tggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||| ||| |||||| ||||||||    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctac 34137078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 2529958 - 2529901
Alignment:
Q  88 caaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaat 145  Q
    ||||||||| |||||||| ||||| ||  |||||||||| |||||||||||| |||||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaat 2529901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 13879524 - 13879641
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 156  Q
    ||||||| || ||||||||| |||| |||||||||||| |  || |||| |||||  |  |||||||||| |||||||| |||  |||| |||| |||||    
T  13879524 tggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaaatcg 13879623  T
Q  157 tggtcttttacctttgga 174  Q
    |||  ||||||| |||||    
T  13879624 tggcattttaccgttgga 13879641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 43270542 - 43270470
Alignment:
Q  68 tggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaa 140  Q
    ||||| |||||||||||| | ||||||||||||||| | ||||||||  ||| |||||| || ||||| ||||    
T  43270542 tggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctactaaaa 43270470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 3 - 335
Target Start/End: Complemental strand, 41207173 - 41206840
Alignment:
Q  3 gtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcct 102  Q
    ||||||| ||||||||||||||||| ||||| || || |   | | ||| ||| |||||||  ||||||| |||||||||||||||||||| ||||||||    
T  41207173 gtggagtttatgacatgctgacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatcct 41207074  T
Q  103 tgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggg 202  Q
    ||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||  || | || ||||| ||||||| ||||||| |  | ||||||    
T  41207073 tgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcggg 41206974  T
Q  203 gccgtcgaagatgt-actcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctc 301  Q
      ||| |||||||| | |||||||||||||   || || |||||  | || |||||| |   | |||||||||||||||||||||| ||||| |||||||    
T  41206973 cacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggccattgatgcgggcatggctcggagtggtaggggttgactctc 41206874  T
Q  302 aatctacttctgatgatttgttgcaatttattaa 335  Q
    |  | ||||| ||| |||| ||||||||||||||    
T  41206873 agacaacttcagatcattttttgcaatttattaa 41206840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 4552327 - 4552190
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| ||| |||||||||| ||||| |||||||    
T  4552327 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatcc 4552228  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4552227 ttgcttggcgacttctgagggatcggttacctacaaaa 4552190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 12645639 - 12645551
Alignment:
Q  57 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaat 145  Q
    |||||||  ||||||| ||||||||| |||| |||||||| |||||||| ||||| ||  |||||||||| |||||||||||| |||||    
T  12645639 tggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaat 12645551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 15917736 - 15917624
Alignment:
Q  78 aggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgc 177  Q
    |||||||||| ||||| | ||||||||| ||| |||| ||||||||||| ||||||||||||   ||| |||| ||||||||| || | |||||||| |     
T  15917736 aggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaaatcgtggtattattcctttggaagt 15917637  T
Q  178 gcggtcgtgtgtc 190  Q
    ||||| |||||||    
T  15917636 gcggttgtgtgtc 15917624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 4552045 - 4551930
Alignment:
Q  283 gtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgattt 382  Q
    ||||| || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       ||||||||||    
T  4552045 gtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgattt 4551946  T
Q  383 ggttactttgtgtttc 398  Q
    |||| |||||||||||    
T  4551945 ggttgctttgtgtttc 4551930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 40176807 - 40176693
Alignment:
Q  21 tgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgag 120  Q
    ||||||||||||| ||||| | ||||| ||  ||| ||||||| || |||||||||||||| ||||| ||||||||  ||||||| |||||  |  ||||    
T  40176807 tgacatcacaggaacaacctcatattcatcaaaatatggagttagtctggcacaaacaggtacctctaaaagtttcagtccttgcttggcggttgttgag 40176708  T
Q  121 ggatcggttacctac 135  Q
    |||||| ||||||||    
T  40176707 ggatcgtttacctac 40176693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 51052638 - 51052241
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||||||||||||||| |||||||    
T  51052638 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcc 51052539  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| |||||||||||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  ||||| ||  | || ||    
T  51052538 ttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgg 51052439  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |   |||||||||| | |||||||||| |||   ||  | |||||  | || |||||| |   ||||||||  ||| | || ||||| || |||||||||    
T  51052438 gattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactct 51052339  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    | ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||| |||||||||||    
T  51052338 cgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttc 51052241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 11909087 - 11909224
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||||||||||||||| ||||||     
T  11909087 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatca 11909186  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| |||||||||||||||||||||||||||||||||    
T  11909187 ttgcttggcgacttctgagggatcggttacctacaaaa 11909224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 35541208 - 35541050
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| ||||||    
T  35541208 tcgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatc 35541109  T
Q  101 cttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtgg 159  Q
    ||||| |||||||| ||||||||||||||||| |||||| | ||| |||| ||||||||    
T  35541108 cttgcttggcgactactgagggatcggttacccacaaaacataatttggcaaatcgtgg 35541050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 6050761 - 6050624
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  6050761 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 6050662  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  6050661 ttgcttggcgactaatgagggatcggttacctacaaaa 6050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 16917800 - 16917924
Alignment:
Q  11 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 110  Q
    |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||||||| ||||    
T  16917800 tatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggc 16917899  T
Q  111 gacttctgagggatcggttacctac 135  Q
    ||||  |||||||||| ||||||||    
T  16917900 gactgttgagggatcgcttacctac 16917924  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 6259712 - 6259619
Alignment:
Q  264 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagaggg 357  Q
    |||||| |||||||| |||||||| |||||||| |||||||| ||||| ||| |||| ||||||||||||||||| | ||| || |||||||||    
T  6259712 ggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgtaggttgttcgagaggg 6259619  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 404
Target Start/End: Complemental strand, 35540928 - 35540804
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  35540928 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 35540829  T
Q  380 tttggttactttgtgtttctgtgct 404  Q
    ||||||| ||||||||||| |||||    
T  35540828 tttggttgctttgtgtttcggtgct 35540804  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 43388526 - 43388392
Alignment:
Q  1 tcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatc 100  Q
    |||||| || |||||| || ||||||||||||| ||||  | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||    
T  43388526 tcgtggtgtatatgacttgttgacatcacaggaacaacttcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatc 43388427  T
Q  101 cttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||| |||||| |  |||||||||| ||||||||    
T  43388426 cttgcttggcgattgttgagggatcgtttacctac 43388392  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 398
Target Start/End: Complemental strand, 26059752 - 26059652
Alignment:
Q  298 tctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 397  Q
    |||||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||| | || ||       |||||||||||||| ||||||||||    
T  26059752 tctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggtgacggtctttcttccacttgatttggttgctttgtgttt 26059653  T
Q  398 c 398  Q
    |    
T  26059652 c 26059652  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 398
Target Start/End: Complemental strand, 4842299 - 4842165
Alignment:
Q  264 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcga 363  Q
    ||||||||||||||| |||||||| |||||||| |||||||| ||||| ||| |||    |||||||||| |||| ||||| || | |||| |||| ||     
T  4842299 ggtgcgggcatggctaggagtggtaggggtcgaatctcaatcaacttcagatcattgtcagcaatttattcattacgcaggttgtttgagaaggcgacgg 4842200  T
Q  364 tcnnnnnnncacttgatttggttactttgtgtttc 398  Q
    ||       |||||||||||||| |||||||||||    
T  4842199 tctttcttccacttgatttggttgctttgtgtttc 4842165  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 47623123 - 47623192
Alignment:
Q  66 tttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 135  Q
    ||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||| ||||||| || ||||||||    
T  47623123 tttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 398
Target Start/End: Complemental strand, 13352180 - 13352075
Alignment:
Q  293 tcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttg 392  Q
    |||||| |||||| ||||| ||| |||| ||| ||||||||||||||||||| || ||||||| ||| || ||       ||||| |||||||| |||||    
T  13352180 tcgactatcaatcaacttcagatcattttttgtaatttattaattatgcaggttgttcgagagagcgacgttcattttttcactttatttggttgctttg 13352081  T
Q  393 tgtttc 398  Q
    ||||||    
T  13352080 tgtttc 13352075  T

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Target: scaffold0472 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 3410 - 3067
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||| ||||||||||||||||||||||||    | |  | |||| |||||||  ||||||| |||||||||||||| |||||||||||||    
T  3410 cgtggagtctatgatatgctgacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatcc 3311  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 201  Q
    |||| ||| ||||| |||| |||||||||||||| |||| |||| |||| || | |||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  3310 ttgcttggagacttttgagagatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 3211  T
Q  202 ggccgtcgaagatg-tactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 300  Q
    |  ||| ||||||| || ||||||||| |||   ||    ||||| || || |||||| |   |||||| |||||| | ||||||||||| |||||||||    
T  3210 gaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggttaggagtggtgggagtcgactct 3111  T
Q  301 caatctacttctgatgatttgttgcaatttattaattatgcagg 344  Q
    || ||||  || ||| |||| ||||||||||| ||||| |||||    
T  3110 cattctatctcagatcattttttgcaatttatcaattacgcagg 3067  T

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Target: scaffold0369 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 11187 - 11324
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    |||||||||||||||||||||||||||||||||||  |||   | |  | |||| |||| ||  ||||||| |||||||||||||||||||| |||||||    
T  11187 cgtggagtctatgacatgctgacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatcc 11286  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  11287 ttgcttggcgacttctcagggatcggttacctacaaaa 11324  T

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Target: scaffold0369; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 11450 - 11548
Alignment:
Q  264 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcg 362  Q
    ||||||||  ||| | |||||||| ||||||||||||||||| ||||| ||| ||||   |||||||||||||||||| || || ||||||||||||||    
T  11450 ggtgcgggattggttaggagtggtaggggtcgactctcaatcaacttcagatcattttgagcaatttattaattatgccggttgttcgagagggcggcg 11548  T

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Target: scaffold0034 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 105825 - 105962
Alignment:
Q  2 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 101  Q
    ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||||||| |||||||    
T  105825 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatcc 105924  T
Q  102 ttgcatggcgacttctgagggatcggttacctacaaaa 139  Q
    |||| ||||||||  |||||||||||||||||||||||    
T  105925 ttgcttggcgactaatgagggatcggttacctacaaaa 105962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 398
Target Start/End: Original strand, 106104 - 106222
Alignment:
Q  280 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 379  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  106104 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 106203  T
Q  380 tttggttactttgtgtttc 398  Q
    ||||||| |||||||||||    
T  106204 tttggttgctttgtgtttc 106222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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