View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20367_low_2 (Length: 675)

Name: NF20367_low_2
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20367_low_2
NF20367_low_2
[»] chr3 (3 HSPs)
chr3 (184-417)||(13833182-13833413)
chr3 (35-114)||(13833051-13833130)
chr3 (41-114)||(16999115-16999188)
[»] chr2 (4 HSPs)
chr2 (206-417)||(23482279-23482489)
chr2 (203-418)||(21516532-21516745)
chr2 (301-364)||(21512116-21512177)
chr2 (77-114)||(35406566-35406603)
[»] chr5 (2 HSPs)
chr5 (203-382)||(20054920-20055098)
chr5 (28-111)||(42687607-42687690)
[»] chr7 (3 HSPs)
chr7 (261-362)||(6531077-6531176)
chr7 (35-112)||(6847780-6847856)
chr7 (72-114)||(11242559-11242601)
[»] chr1 (3 HSPs)
chr1 (25-114)||(12727140-12727229)
chr1 (40-102)||(12788688-12788750)
chr1 (203-250)||(8236179-8236227)
[»] chr8 (2 HSPs)
chr8 (20-114)||(9798409-9798503)
chr8 (569-602)||(15207313-15207346)
[»] chr4 (2 HSPs)
chr4 (203-358)||(17464685-17464843)
chr4 (314-417)||(21276640-21276741)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 184 - 417
Target Start/End: Original strand, 13833182 - 13833413
Alignment:
Q  184 gcaattataaacttagagtaaagtaactttgatttcaataataaacaagttttcaatgatccaagatgatttgcaattttgataaatgacctatttatag 283  Q
    ||||| |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||||||||||||||||| | |  ||||   ||||||||||||    
T  13833182 gcaataataaacttagagcaaagtaactttg-tttcaatagtaaacatgtttccaatgatccaagatgatttgcagtcta-ataatgaacctatttatag 13833279  T
Q  284 tctaagtttc-tagacaatgcattgaaggtgaattacaagctttaaaatgaagaaaaacaaagagttttgcaacagccaaaaggtgacaacaaaaacgca 382  Q
    ||||||  || ||||||||||||||||||| |||||||||||||||||||  ||||| |||||||||||  |||||||||||| | ||| ||||||||||    
T  13833280 tctaagggtcatagacaatgcattgaaggtcaattacaagctttaaaatggggaaaa-caaagagttttttaacagccaaaagctaacagcaaaaacgca 13833378  T
Q  383 tggtctgggtttcagaccgtgcacttttcaacttc 417  Q
     |||||| | || ||| |||||| |||||||||||    
T  13833379 cggtctgcgctttagatcgtgcatttttcaacttc 13833413  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 13833051 - 13833130
Alignment:
Q  35 ggtccactcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataattgtaaatgact 114  Q
    |||| ||||||||||||| |||||||| |||||||||||||  ||| ||| ||||||||||| |||||||||||||||||    
T  13833051 ggtctactcactcatgatcatagtagacaaaagattaaagtcgaaaaacatagaaataaatttcataattgtaaatgact 13833130  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 16999115 - 16999188
Alignment:
Q  41 ctcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataattgtaaatgact 114  Q
    |||||||||||| || | ||| ||||| || || |||||||||| | || |||||| |||||||||||||||||    
T  16999115 ctcactcatgatcattgaagacaaaagtttgaaataaaaagacatacaagtaaatttcataattgtaaatgact 16999188  T

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Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 206 - 417
Target Start/End: Complemental strand, 23482489 - 23482279
Alignment:
Q  206 gtaactttgatttcaataataaacaagttttcaatgatccaagatgatttgcaattttgataaatgacctatttatagtctaagtttctagacaatgcat 305  Q
    |||||||||||||||||||||| ||||||  |||   || |||||||||||||   | |||||  ||||||||||||| ||||| |  |||||||| |||    
T  23482489 gtaactttgatttcaataataagcaagttcacaagattcaaagatgatttgcagcct-gataatggacctatttatagcctaaggtcttagacaattcat 23482391  T
Q  306 tgaaggtgaattacaagctttaaaatgaagaaaaacaaagagttttgcaacagccaaaaggtgacaacaaaaacgcatggtctgggtttcagaccgtgca 405  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||| ||||| ||||| |||| |||||    |||||||||||||    
T  23482390 tgaaggtgaattacaagctttaaaatgaggaaaaataaagagttttgtaacaaccaaaagttgacagcaaaatcgcacggtcttaagttcagaccgtgca 23482291  T
Q  406 cttttcaacttc 417  Q
    ||||||||||||    
T  23482290 cttttcaacttc 23482279  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 203 - 418
Target Start/End: Original strand, 21516532 - 21516745
Alignment:
Q  203 aaagtaactttg-atttcaataataaacaagttttcaatgatccaagatgatttgcaattttgataaatgacctatttatagtctaagtttctagacaat 301  Q
    ||||||| |||| ||||||||||||  ||||||| |||||||||||| |||||| || | | |||||  ||||||||||||  || || |  ||||||||    
T  21516532 aaagtaattttgtatttcaataatat-caagtttccaatgatccaaggtgattttcagtct-gataatggacctatttataagcttaggtcatagacaat 21516629  T
Q  302 gcattgaaggtgaattacaagctttaaaatgaagaaaaacaaagagttttgcaacagcca-aaaggtgacaacaaaaacgcatggtctgggtttcagacc 400  Q
    ||||||||||| ||||||||||||||||||   |||||||||||||||||| ||||||||  ||| |||||||||||||| | ||||||   | ||||||    
T  21516630 gcattgaaggtaaattacaagctttaaaat--cgaaaaacaaagagttttgtaacagccacgaagctgacaacaaaaacgaacggtctgaagtccagacc 21516727  T
Q  401 gtgcacttttcaacttct 418  Q
    |||||||||||| |||||    
T  21516728 gtgcacttttcagcttct 21516745  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 21512116 - 21512177
Alignment:
Q  301 tgcattgaaggtgaattacaagctttaaaatgaagaaaaacaaagagttttgcaacagccaaaa 364  Q
    |||||||||||| ||||||||| |||||||||  | |||||||||||||||| |||||||||||    
T  21512116 tgcattgaaggtaaattacaagttttaaaatg--ggaaaacaaagagttttgtaacagccaaaa 21512177  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 35406603 - 35406566
Alignment:
Q  77 aaaagacagagaaataaattgcataattgtaaatgact 114  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  35406603 aaaagacatagaaatgaattgcataattgtaaatgact 35406566  T

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Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 203 - 382
Target Start/End: Complemental strand, 20055098 - 20054920
Alignment:
Q  203 aaagtaactttg-atttcaataataaacaagttttcaatgatccaagatgatttgcaattttgataaatgacctatttatagtctaagtttctagacaat 301  Q
    |||||||||||| |||||||||| || ||||||||||||||||||||||||||||| | | ||||||  ||| ||||||||| || || |  ||||||||    
T  20055098 aaagtaactttgtatttcaataacaagcaagttttcaatgatccaagatgatttgc-agtatgataatggacatatttatagccttaggtcatagacaat 20055000  T
Q  302 gcattgaaggtgaattacaagctttaaaatgaagaaaaacaaagagttttgcaacagccaa-aaggtgacaacaaaaacgca 382  Q
    ||||||||||| ||||||||||||||||||  || |||||||||||||| | ||||||||| ||| ||||||||||||||||    
T  20054999 gcattgaaggtaaattacaagctttaaaat--aggaaaacaaagagtttcgtaacagccaagaagctgacaacaaaaacgca 20054920  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 42687607 - 42687690
Alignment:
Q  28 actagatggtccactcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataattgtaaatg 111  Q
    |||||| |||| |||||||||  || || |||||  ||||||| || |||||||||| |||| |||||||||||||||||||||    
T  42687607 actagaaggtctactcactcaaaatcattgtagaccaaagattgaaataaaaagacatagaactaaattgcataattgtaaatg 42687690  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 6531176 - 6531077
Alignment:
Q  261 tttgataaatgacctatttatagtctaagtttctagacaatgcattgaaggtgaattacaagctttaaaatgaagaaaaacaaagagttttgcaacagcc 360  Q
    ||||||||  ||||||||||||| || || |  ||||||||||||| ||||| |||||||||||||||| ||  |||||||||||||||||| |||||||    
T  6531176 tttgataatggacctatttatagccttaggtcatagacaatgcattaaaggtaaattacaagctttaaagtg--gaaaaacaaagagttttgtaacagcc 6531079  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 6847780 - 6847856
Alignment:
Q  35 ggtccactcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataattgtaaatga 112  Q
    |||| ||||||| ||||| |||||||| |||||||| || |||||||||| |||| ||||||||||| ||||||||||    
T  6847780 ggtctactcacttatgatcatagtagacaaaagatttaaataaaaagacatagaa-taaattgcatagttgtaaatga 6847856  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 11242601 - 11242559
Alignment:
Q  72 aagtaaaaagacagagaaataaattgcataattgtaaatgact 114  Q
    |||||||||| || |||||||||||| ||||||||||||||||    
T  11242601 aagtaaaaaggcatagaaataaattgtataattgtaaatgact 11242559  T

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Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 12727140 - 12727229
Alignment:
Q  25 aagactagatggtccactcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataattgtaaatgact 114  Q
    ||||||||| |||  ||||| ||||||| || ||| ||| ||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  12727140 aagactagaaggtttactcattcatgatcatggtacatagaagattaaagtaaaaaggcatagaaataaattgtataattgtaaatgact 12727229  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 12788750 - 12788688
Alignment:
Q  40 actcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataa 102  Q
    |||||||||||||||| ||||| ||  |||||||||||| |||||  |||||||| |||||||    
T  12788750 actcactcatgataattgtagacaagggattaaagtaaagagacatggaaataaaatgcataa 12788688  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 8236227 - 8236179
Alignment:
Q  203 aaagtaactttg-atttcaataataaacaagttttcaatgatccaagat 250  Q
    |||||||||||| || |||||||||| ||||||| ||||||||||||||    
T  8236227 aaagtaactttgtatatcaataataagcaagtttccaatgatccaagat 8236179  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 9798409 - 9798503
Alignment:
Q  20 atcctaagactagatggtccactcactcatgataatagtagataaaagattaaagtaaaaagacagagaaataaattgcataattgtaaatgact 114  Q
    |||| ||||||||| |||| |||| || ||||| |||||||| |||||||||||||| || | || ||||||||||||  |||||||||||||||    
T  9798409 atcccaagactagaaggtctactctctaatgattatagtagacaaaagattaaagtagaacgccatagaaataaattgtttaattgtaaatgact 9798503  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 602
Target Start/End: Complemental strand, 15207346 - 15207313
Alignment:
Q  569 cgttgcctcctgttttgcttccttttcttcatgc 602  Q
    |||| |||||||||||||||||||||||||||||    
T  15207346 cgttacctcctgttttgcttccttttcttcatgc 15207313  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 358
Target Start/End: Complemental strand, 17464843 - 17464685
Alignment:
Q  203 aaagtaactttg-atttcaataataaacaagttttcaatgatccaagatgatttgcaattttgataaatgacctatttatagtct-aagtttctagacaa 300  Q
    |||||||||||| |||||||||| || ||||||| ||||||||||||||| ||| ||| | ||||| | ||| ||||||| |||| |||| || ||||||    
T  17464843 aaagtaactttgtatttcaataaaaagcaagtttccaatgatccaagatggtttacaagtctgatagaggacttatttatggtctaaagtctcaagacaa 17464744  T
Q  301 tgcattgaaggtgaa-ttacaagctttaaaatgaagaaaaacaaagagttttgcaacag 358  Q
     ||||| |    ||| |||||| ||||||||| ||| ||||| |||||||||| |||||    
T  17464743 ggcattaaccacgaatttacaacctttaaaatcaaggaaaactaagagttttgtaacag 17464685  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 417
Target Start/End: Complemental strand, 21276741 - 21276640
Alignment:
Q  314 aattacaagctttaaaatgaagaaaaacaaagagttttgcaacagccaaaaggtgacaacaaaaacgcatggtctgggtttcagaccgtgcacttttcaa 413  Q
    |||||||| ||||||| | | ||||| |||||||||||| |||||| ||||| |||||  ||||| ||| ||||| || | |||||||||||||||||||    
T  21276741 aattacaaactttaaattaaggaaaaccaaagagttttgtaacagc-aaaagttgacaggaaaaatgcacggtctaggct-cagaccgtgcacttttcaa 21276644  T
Q  414 cttc 417  Q
    ||||    
T  21276643 cttc 21276640  T

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