View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20367_low_20 (Length: 400)
Name: NF20367_low_20
Description: NF20367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20367_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 15702999 - 15702628
Alignment:
| Q |
19 |
gaagtacctataagtagtgtttcccctagatagttgattcttttttaaaaacaaaatcataaatattttactgtgaacaagcctgaattgtacaaatcaa |
118 |
Q |
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| T |
15702999 |
gaagtacctataagtagtgtttcccctagatagttgattcttttttaaaaacaaaatcataaatattttactgtgaacaagcctgaattgtacaaatcaa |
15702900 |
T |
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| Q |
119 |
tgcaaaagattatggtagaaaattgatgacaaattttgtttcttcaaattgaaaattaataatggaaaaagtatattatctctccaccaaccatcattgg |
218 |
Q |
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| T |
15702899 |
tgcaaaagattatggaagaaaattgatgacaaattttgtttcttcaaattgaaaattaataatggaaaaagtatattatctctccaccaaccatcattgg |
15702800 |
T |
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| Q |
219 |
ataatgcactttctgagatttatactaaggttggattctgataggactagaagatagatgcaattatgttatttactcattcagttatttcctccctgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15702799 |
ataatgcactttctgagatttatactaaggttggattctgataggactagaagatagatgcaattatgttatttactcattcagttatttcctccctgat |
15702700 |
T |
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| Q |
319 |
gtaatagctatataatgttgtatttgtgagccaatagcttatgatgaatgataagaatatttcttctctctc |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15702699 |
gtaatagctatataatgttgtatttgtgagccaatagcttatgatgaatgataagaatatttcttctctctc |
15702628 |
T |
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